Difference between revisions of "TSS:Hg 106379.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
− | |all_trans= | + | |all_trans=NM_001330738:0 NM_001330737:0 NM_001330736:0 NM_001330735:0 NM_001330733:0 LF345592:-137 MA581169:-137 LF345593:163 MA581170:163 ENST00000563195.1:-196 ENST00000539666.5:-212 ENST00000478086.5:-212 ENST00000624776.3:-212 NM_001278525:-212 NM_001330732:-212 AK095317:-212 BC030967:-212 NM_001330734:315 BC109046:-364 BC109045:-369 ENST00000484770.1:372 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
− | |distance= | + | |distance=0 |
|distance_to_tss=7 | |distance_to_tss=7 | ||
|end=96130307 | |end=96130307 | ||
+ | |end_of_center_position=96130288 | ||
|entrez_id=9849 | |entrez_id=9849 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
Line 18: | Line 19: | ||
|hgnc_mgi_id=HGNC:29009 | |hgnc_mgi_id=HGNC:29009 | ||
|nearest_ensembl=ENSG00000177853 | |nearest_ensembl=ENSG00000177853 | ||
− | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001330735 |
|nearest_refseq=NM_014803 | |nearest_refseq=NM_014803 | ||
|nearest_unigene=Hs.600823 | |nearest_unigene=Hs.600823 | ||
− | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=96130267 | |start=96130267 | ||
+ | |start_of_center_position=96130287 | ||
|strand=+ | |strand=+ | ||
− | |transcript_name= | + | |transcript_name=NM_001330736.1 NM_001330737.1 NM_001330735.1 NM_001330733.1 NM_001330738.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106379.1 | |tss_id=hg_106379.1 | ||
|tss_score=1 | |tss_score=1 | ||
− | |uniprot_id= | + | |uniprot_id=Q6AHZ1 |
}} | }} |
Latest revision as of 19:51, 19 July 2021
Basic information about the TSS
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Start of the center position in the TSS region: | 96130287 |
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End of the center position in the TSS region: | 96130288 |
Gene and protein annotation
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Transcript annotation
Transcript_name: | NM_001330736.1 NM_001330737.1 NM_001330735.1 NM_001330733.1 NM_001330738.1 |
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Distance: | 0 |
Num_trans: | 21 |
All_trans: | NM_001330738:0 NM_001330737:0 NM_001330736:0 NM_001330735:0 NM_001330733:0 LF345592:-137 MA581169:-137 LF345593:163 MA581170:163 ENST00000563195.1:-196 ENST00000539666.5:-212 ENST00000478086.5:-212 ENST00000624776.3:-212 NM_001278525:-212 NM_001330732:-212 AK095317:-212 BC030967:-212 NM_001330734:315 BC109046:-364 BC109045:-369 ENST00000484770.1:372 |
TATA-Box annotation
Distance to TSS: | 7 |
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Nearest PromoterID: | NM_001330735 |
Entrez ID: | 9849 |
Nearest Unigene: | Hs.600823 |
Nearest Refseq: | NM_014803 |
Nearest Ensembl: | ENSG00000177853 |
Gene Name: | zinc finger protein 518A |
Gene Alias: | ZNF518 |
Gene Description: | zinc finger protein 518A |
Gene Type: | protein-coding |
CpG%: | 0.07 |
GC%: | 0.537313 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |