Difference between revisions of "TSS:Mm 167187.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000038946.8:390 NM_019391:390 NM_001271508:390 uc009kne.1:390 uc009knf.2:390 uc009kng.2:390 M90316:390 ENSMUST00000128986.7:419 AK031587:419 |c...") |
|||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000038946.8 | + | |WP34= |
| + | |all_trans=LF296795:33 MA532372:33 LF296796:121 MA532373:121 ENSMUST00000038946.8:390 NM_001271508:390 NM_019391:390 M90316:390 ENSMUST00000128986.7:419 AK031587:419 LF296797:492 MA532374:492 | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=33 |
|distance_to_tss=-399 | |distance_to_tss=-399 | ||
|end=142471453 | |end=142471453 | ||
| + | |end_of_center_position=142471444 | ||
|entrez_id=16985 | |entrez_id=16985 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
| − | |gene_alias=Lsp-1 | + | |gene_alias=Lsp-1{{!}}WP34{{!}}p50{{!}}pp52 |
|gene_description=lymphocyte specific 1 | |gene_description=lymphocyte specific 1 | ||
|gene_id=16985 | |gene_id=16985 | ||
| − | |gene_name= | + | |gene_name=Lsp1 |
|gene_source=MGI:96832 | |gene_source=MGI:96832 | ||
|gene_symbol=Lsp1 | |gene_symbol=Lsp1 | ||
| Line 21: | Line 23: | ||
|nearest_refseq=NM_019391 | |nearest_refseq=NM_019391 | ||
|nearest_unigene=Mm.234003 | |nearest_unigene=Mm.234003 | ||
| − | |num_trans= | + | |num_trans=12 |
| + | |p50= | ||
| + | |pp52= | ||
|species=mouse | |species=mouse | ||
|start=142471434 | |start=142471434 | ||
| + | |start_of_center_position=142471443 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF296795 MA532372 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_167187.1 | |tss_id=mm_167187.1 | ||
Latest revision as of 18:11, 20 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 142471443 |
|---|---|
| End of the center position in the TSS region: | 142471444 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF296795 MA532372 |
|---|---|
| Distance: | 33 |
| Num_trans: | 12 |
| All_trans: | LF296795:33 MA532372:33 LF296796:121 MA532373:121 ENSMUST00000038946.8:390 NM_001271508:390 NM_019391:390 M90316:390 ENSMUST00000128986.7:419 AK031587:419 LF296797:492 MA532374:492 |
TATA-Box annotation
| Distance to TSS: | -399 |
|---|---|
| Nearest PromoterID: | NM_001271508 |
| Entrez ID: | 16985 |
| Nearest Unigene: | Mm.234003 |
| Nearest Refseq: | NM_019391 |
| Nearest Ensembl: | ENSMUSG00000018819 |
| Gene Name: | Lsp1 |
| Gene Alias: | Lsp-1|WP34|p50|pp52 |
| Gene Description: | lymphocyte specific 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
