Difference between revisions of "TSS:Hg 109655.1"
From referenceTSS
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| Line 3: | Line 3: | ||
|CMT4E= | |CMT4E= | ||
|KROX20= | |KROX20= | ||
| − | |all_trans= | + | |all_trans=HGNC:3239 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=7 |
|end=62816373 | |end=62816373 | ||
| + | |end_of_center_position=62816360 | ||
|entrez_id=1959 | |entrez_id=1959 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
| − | |gene_alias=AT591 | + | |gene_alias=AT591{{!}}CHN1{{!}}CMT1D{{!}}CMT4E{{!}}KROX20 |
|gene_description=early growth response 2 | |gene_description=early growth response 2 | ||
|gene_id=1959 | |gene_id=1959 | ||
| Line 21: | Line 22: | ||
|hgnc_mgi_id=HGNC:3239 | |hgnc_mgi_id=HGNC:3239 | ||
|nearest_ensembl=ENSG00000122877 | |nearest_ensembl=ENSG00000122877 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_000399 |
|nearest_refseq=NM_000399 | |nearest_refseq=NM_000399 | ||
|nearest_unigene=Hs.1395 | |nearest_unigene=Hs.1395 | ||
| − | |num_trans= | + | |num_trans=1959 |
|species=human | |species=human | ||
|start=62816345 | |start=62816345 | ||
| + | |start_of_center_position=62816359 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-80(GTCCATATATGG,-,0.00),-78(CCATATATGGGC,+,0.00),-40(GCCCATAAATAC,-,0.00) |
| − | |transcript_name=ENST00000242480 | + | |transcript_name=ENST00000242480.4 ENST00000637191.1 BC035625 CR749641 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_109655.1 | |tss_id=hg_109655.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=P11161 | + | |uniprot_id=A0A1B0GUL0 P11161 |
}} | }} | ||
Latest revision as of 21:02, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 62816359 |
|---|---|
| End of the center position in the TSS region: | 62816360 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000242480.4 ENST00000637191.1 BC035625 CR749641 |
|---|---|
| Distance: | 0 |
| Num_trans: | 1959 |
| All_trans: | HGNC:3239 |
TATA-Box annotation
| Distance to TSS: | 7 |
|---|---|
| Nearest PromoterID: | NM_000399 |
| Entrez ID: | 1959 |
| Nearest Unigene: | Hs.1395 |
| Nearest Refseq: | NM_000399 |
| Nearest Ensembl: | ENSG00000122877 |
| Gene Name: | early growth response 2 |
| Gene Alias: | AT591|CHN1|CMT1D|CMT4E|KROX20 |
| Gene Description: | early growth response 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -80(GTCCATATATGG,-,0.00),-78(CCATATATGGGC,+,0.00),-40(GCCCATAAATAC,-,0.00) |
