Difference between revisions of "TSS:Hg 112302.1"
From referenceTSS
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:28703 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=1161 | |distance_to_tss=1161 | ||
|end=829430 | |end=829430 | ||
| + | |end_of_center_position=829422 | ||
|entrez_id=283229 | |entrez_id=283229 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=HGNC:28703 | |hgnc_mgi_id=HGNC:28703 | ||
|nearest_ensembl=ENSG00000177685 | |nearest_ensembl=ENSG00000177685 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_173584 |
|nearest_refseq=NM_173584 | |nearest_refseq=NM_173584 | ||
|nearest_unigene=Hs.660936 | |nearest_unigene=Hs.660936 | ||
| − | |num_trans= | + | |num_trans=283229 |
|species=human | |species=human | ||
|start=829412 | |start=829412 | ||
| + | |start_of_center_position=829421 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000528694 | + | |transcript_name=ENST00000528694.1 AK097334 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_112302.1 | |tss_id=hg_112302.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 22:00, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 829421 |
|---|---|
| End of the center position in the TSS region: | 829422 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000528694.1 AK097334 |
|---|---|
| Distance: | -106 |
| Num_trans: | 283229 |
| All_trans: | HGNC:28703 |
TATA-Box annotation
| Distance to TSS: | 1161 |
|---|---|
| Nearest PromoterID: | NM_173584 |
| Entrez ID: | 283229 |
| Nearest Unigene: | Hs.660936 |
| Nearest Refseq: | NM_173584 |
| Nearest Ensembl: | ENSG00000177685 |
| Gene Name: | calcium release activated channel regulator 2B |
| Gene Alias: | EFCAB4A |
| Gene Description: | calcium release activated channel regulator 2B |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
