Difference between revisions of "TSS:Mm 8221.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK038155:-183 |chr=chr1 |cpg_percent=0 |distance=-183 |distance_to_tss=9932 |end=138165200 |entrez_id=19264 |gc_percent=0.40796 |gene_alias=B220|CD45R|C...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |CD45R= |
| + | |Cd45= | ||
| + | |L-CA= | ||
| + | |Ly-5= | ||
| + | |Lyt-4= | ||
| + | |T200= | ||
| + | |all_trans=MGI:2444749 | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| Line 6: | Line 12: | ||
|distance_to_tss=9932 | |distance_to_tss=9932 | ||
|end=138165200 | |end=138165200 | ||
| + | |end_of_center_position=138165195 | ||
|entrez_id=19264 | |entrez_id=19264 | ||
|gc_percent=0.40796 | |gc_percent=0.40796 | ||
| − | |gene_alias=B220 | + | |gene_alias=B220{{!}}CD45R{{!}}Cd45{{!}}L-CA{{!}}Ly-5{{!}}Lyt-4{{!}}T200{{!}}loc |
| − | |gene_description= | + | |gene_description=protein tyrosine phosphatase, receptor type, C |
|gene_id=320791 | |gene_id=320791 | ||
|gene_name=RIKEN cDNA A130071D04 gene | |gene_name=RIKEN cDNA A130071D04 gene | ||
| Line 17: | Line 24: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:2444749 | |hgnc_mgi_id=MGI:2444749 | ||
| + | |loc= | ||
|nearest_ensembl=ENSMUSG00000026395 | |nearest_ensembl=ENSMUSG00000026395 | ||
|nearest_promoter_id=NM_001111316 | |nearest_promoter_id=NM_001111316 | ||
|nearest_refseq=NM_011210 | |nearest_refseq=NM_011210 | ||
|nearest_unigene=Mm.391573 | |nearest_unigene=Mm.391573 | ||
| − | |num_trans= | + | |num_trans=320791 |
|species=mouse | |species=mouse | ||
|start=138165188 | |start=138165188 | ||
| + | |start_of_center_position=138165194 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-82(CCTTTAATACCA,+,0.00),18(CTGTTTAAAAAG,-,0.00) |
|transcript_name=AK038155 | |transcript_name=AK038155 | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 13:08, 28 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 138165194 |
|---|---|
| End of the center position in the TSS region: | 138165195 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK038155 |
|---|---|
| Distance: | -183 |
| Num_trans: | 320791 |
| All_trans: | MGI:2444749 |
TATA-Box annotation
| Distance to TSS: | 9932 |
|---|---|
| Nearest PromoterID: | NM_001111316 |
| Entrez ID: | 19264 |
| Nearest Unigene: | Mm.391573 |
| Nearest Refseq: | NM_011210 |
| Nearest Ensembl: | ENSMUSG00000026395 |
| Gene Name: | RIKEN cDNA A130071D04 gene |
| Gene Alias: | B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc |
| Gene Description: | protein tyrosine phosphatase, receptor type, C |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.40796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -82(CCTTTAATACCA,+,0.00),18(CTGTTTAAAAAG,-,0.00) |
