Difference between revisions of "TSS:Mm 9939.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:97772 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
|distance=-468 | |distance=-468 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-101 |
|end=190170212 | |end=190170212 | ||
| − | |entrez_id= | + | |end_of_center_position=190170196 |
| + | |entrez_id=102632463 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
| − | |gene_alias= | + | |gene_alias=- |
| − | |gene_description= | + | |gene_description=uncharacterized LOC102632463 |
|gene_id=19130 | |gene_id=19130 | ||
|gene_name=prospero homeobox 1 | |gene_name=prospero homeobox 1 | ||
| Line 15: | Line 16: | ||
|gene_symbol=Prox1 | |gene_symbol=Prox1 | ||
|gene_synonyms=A230003G05Rik | |gene_synonyms=A230003G05Rik | ||
| − | |gene_type= | + | |gene_type=ncRNA |
|hgnc_mgi_id=MGI:97772 | |hgnc_mgi_id=MGI:97772 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSMUSG00000079045 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_151620 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_151620 |
| − | |nearest_unigene=Mm. | + | |nearest_unigene=Mm.400402 |
| − | |num_trans= | + | |num_trans=19130 |
|species=mouse | |species=mouse | ||
|start=190170178 | |start=190170178 | ||
| + | |start_of_center_position=190170195 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000177288.3 | + | |transcript_name=ENSMUST00000177288.3 BC051411 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_9939.1 | |tss_id=mm_9939.1 | ||
Latest revision as of 19:25, 28 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 190170195 |
|---|---|
| End of the center position in the TSS region: | 190170196 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000177288.3 BC051411 |
|---|---|
| Distance: | -468 |
| Num_trans: | 19130 |
| All_trans: | MGI:97772 |
TATA-Box annotation
| Distance to TSS: | -101 |
|---|---|
| Nearest PromoterID: | NR_151620 |
| Entrez ID: | 102632463 |
| Nearest Unigene: | Mm.400402 |
| Nearest Refseq: | NR_151620 |
| Nearest Ensembl: | ENSMUSG00000079045 |
| Gene Name: | prospero homeobox 1 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC102632463 |
| Gene Type: | ncRNA |
| CpG%: | 0.06 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
