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Difference between revisions of "TSS:Hg 118112.1"

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{{TSSDetail
 
{{TSSDetail
|all_trans=BC015952:-32 BC069247:52 BC063564:78 BC098439:80 ENST00000411861.5:98 uc021qbz.2:98 BC063626:98 BC023213:128 ENST00000439725.5:-135 uc021qca.2:-135 BC053636:-149 BC110657:-149 BC053637:156 BC007513:170 BC115700:-178 BC006831:210 ENST00000417089.5:290 uc057xvu.1:290 BC002550:-331 BC040852:-436 BC040073:-453 ENST00000422826.1:-472 ENST00000411754.5:-472 uc057xvs.1:-472 uc057xvv.1:-472 LG052084:484 ENST00000412788.5:-489 uc001lva.5:-489 ENST00000431095.5:-490 uc057xvw.1:-490
+
|all_trans=LF370714:0 MA606291:0 BC015952:-32 BC069247:52 LF370712:69 MA606289:69 BC063564:78 BC098439:80 ENST00000411861.5:98 BC063626:98 BC023213:128 ENST00000439725.5:-135 LF370715:-144 MA606292:-144 BC053636:-149 BC110657:-149 BC053637:156 LF370711:166 MA606288:166 BC007513:170 BC115700:-178 BC006831:210 LF370717:-264 MA606294:-264 LF370709:282 MA606286:282 LF370719:-402 MA606296:-402 BC040852:-436 BC040073:-453 LG052084:484 LY496531:484 LY497206:484 LY497818:484 LZ238758:484 MS884393:484 MS994539:484 MS996884:484 MA806128:484 MA822797:484 LY616522:484 MB407223:484 ENST00000412788.5:-489 LF160208:493 LP727120:493 LP819390:493 LP939332:493 LQ072820:493 LQ441143:493 LQ673013:493 LY405561:493 LY496320:493 LY496766:493 LY497013:493 LY497420:493 LY497638:493 LY498022:493 LZ234253:493 LZ238499:493 LZ239038:493 MA260800:493 MA405867:493 MA646321:493 MA734205:493 MS833934:493 MS884200:493 MS884607:493 MS902101:493 MS994328:493 MS994774:493 MS996704:493 MS997088:493 MA803374:493 MA805853:493 MA806405:493 MA822458:493 LY616263:493 LY616802:493
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.035
 
|cpg_percent=0.035
|distance=-32
+
|distance=0
 
|distance_to_tss=-489
 
|distance_to_tss=-489
 
|end=1997325
 
|end=1997325
 +
|end_of_center_position=1997320
 
|entrez_id=100033819
 
|entrez_id=100033819
 
|gc_percent=0.651741
 
|gc_percent=0.651741
|gene_alias=MIRN675|hsa-mir-675
+
|gene_alias=MIRN675{{!}}hsa-mir-675
 
|gene_description=microRNA 675
 
|gene_description=microRNA 675
 
|gene_id=283120
 
|gene_id=283120
|gene_name="H19, imprinted maternally expressed transcript (non-protein coding)"
+
|gene_name=MIR675
 
|gene_source=HGNC:4713
 
|gene_source=HGNC:4713
 
|gene_symbol=H19
 
|gene_symbol=H19
Line 18: Line 19:
 
|hgnc_mgi_id=HGNC:4713
 
|hgnc_mgi_id=HGNC:4713
 
|hsa-mir-675=
 
|hsa-mir-675=
|nearest_ensembl=ENSG00000130600
+
|nearest_ensembl=ENSG00000284010
 
|nearest_promoter_id=NR_030533
 
|nearest_promoter_id=NR_030533
 
|nearest_refseq=NR_030533
 
|nearest_refseq=NR_030533
 
|nearest_unigene=
 
|nearest_unigene=
|num_trans=30
+
|num_trans=78
 
|species=human
 
|species=human
 
|start=1997314
 
|start=1997314
 +
|start_of_center_position=1997319
 
|strand=-
 
|strand=-
|transcript_name=BC015952
+
|transcript_name=LF370714 MA606291
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_118112.1
 
|tss_id=hg_118112.1

Latest revision as of 23:08, 15 June 2021

Basic information about the TSS


TSS ID:hg_118112.1
Species:human
Chr:chr11
TSS Classification:yes
Start:1997314
End:1997325
Strand:-
TSS Score:1
Start of the center position in the TSS region:1997319
End of the center position in the TSS region:1997320



Gene and protein annotation


Transcript_name:LF370714 MA606291
Distance:0
GeneID:283120
HGNC/MGI_ID:HGNC:4713
UniProt_ID:
Gene_name:MIR675
Gene_symbol:H19
Gene_synonyms:ASM ASM1 D11S813E LINC00008 NCRNA00008
Gene_source:HGNC:4713



Transcript annotation


Transcript_name:LF370714 MA606291
Distance:0
Num_trans:78
All_trans:LF370714:0 MA606291:0 BC015952:-32 BC069247:52 LF370712:69 MA606289:69 BC063564:78 BC098439:80 ENST00000411861.5:98 BC063626:98 BC023213:128 ENST00000439725.5:-135 LF370715:-144 MA606292:-144 BC053636:-149 BC110657:-149 BC053637:156 LF370711:166 MA606288:166 BC007513:170 BC115700:-178 BC006831:210 LF370717:-264 MA606294:-264 LF370709:282 MA606286:282 LF370719:-402 MA606296:-402 BC040852:-436 BC040073:-453 LG052084:484 LY496531:484 LY497206:484 LY497818:484 LZ238758:484 MS884393:484 MS994539:484 MS996884:484 MA806128:484 MA822797:484 LY616522:484 MB407223:484 ENST00000412788.5:-489 LF160208:493 LP727120:493 LP819390:493 LP939332:493 LQ072820:493 LQ441143:493 LQ673013:493 LY405561:493 LY496320:493 LY496766:493 LY497013:493 LY497420:493 LY497638:493 LY498022:493 LZ234253:493 LZ238499:493 LZ239038:493 MA260800:493 MA405867:493 MA646321:493 MA734205:493 MS833934:493 MS884200:493 MS884607:493 MS902101:493 MS994328:493 MS994774:493 MS996704:493 MS997088:493 MA803374:493 MA805853:493 MA806405:493 MA822458:493 LY616263:493 LY616802:493



TATA-Box annotation


Distance to TSS:-489
Nearest PromoterID:NR_030533
Entrez ID:100033819
Nearest Unigene:
Nearest Refseq:NR_030533
Nearest Ensembl:ENSG00000284010
Gene Name:MIR675
Gene Alias:MIRN675|hsa-mir-675
Gene Description:microRNA 675
Gene Type:ncRNA
CpG%:0.035
GC%:0.651741
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):