Difference between revisions of "TSS:Hg 121179.1"
From referenceTSS
| (2 intermediate revisions by the same user not shown) | |||
| Line 2: | Line 2: | ||
|PDE2A1= | |PDE2A1= | ||
|PED2A4= | |PED2A4= | ||
| − | |all_trans= | + | |all_trans=HGNC:8777 |
|cGSPDE= | |cGSPDE= | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=15 |
|end=72642448 | |end=72642448 | ||
| + | |end_of_center_position=72642428 | ||
|entrez_id=5138 | |entrez_id=5138 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
| − | |gene_alias=CGS-PDE | + | |gene_alias=CGS-PDE{{!}}PDE2A1{{!}}PED2A4{{!}}cGSPDE |
|gene_description=phosphodiesterase 2A | |gene_description=phosphodiesterase 2A | ||
|gene_id=5138 | |gene_id=5138 | ||
| Line 21: | Line 22: | ||
|hgnc_mgi_id=HGNC:8777 | |hgnc_mgi_id=HGNC:8777 | ||
|nearest_ensembl=ENSG00000186642 | |nearest_ensembl=ENSG00000186642 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001143839 |
|nearest_refseq=NM_002599 | |nearest_refseq=NM_002599 | ||
|nearest_unigene=Hs.503163 | |nearest_unigene=Hs.503163 | ||
| − | |num_trans= | + | |num_trans=5138 |
|species=human | |species=human | ||
|start=72642407 | |start=72642407 | ||
| + | |start_of_center_position=72642427 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000376450.7 ENST00000539367.5 ENST00000536308.5 ENST00000543575.5 ENST00000541998.5 | + | |transcript_name=ENST00000376450.7 ENST00000539367.5 ENST00000536308.5 ENST00000543575.5 ENST00000541998.5 AK131525 AK092278 AY495089 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_121179.1 | |tss_id=hg_121179.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=F5H2R8 F5H3Z7 O00408 | + | |uniprot_id=F5H2R8 F5H3Z7 O00408 Q8IW54 |
}} | }} | ||
Latest revision as of 01:14, 20 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 72642427 |
|---|---|
| End of the center position in the TSS region: | 72642428 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000376450.7 ENST00000539367.5 ENST00000536308.5 ENST00000543575.5 ENST00000541998.5 AK131525 AK092278 AY495089 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5138 |
| All_trans: | HGNC:8777 |
TATA-Box annotation
| Distance to TSS: | 15 |
|---|---|
| Nearest PromoterID: | NM_001143839 |
| Entrez ID: | 5138 |
| Nearest Unigene: | Hs.503163 |
| Nearest Refseq: | NM_002599 |
| Nearest Ensembl: | ENSG00000186642 |
| Gene Name: | phosphodiesterase 2A |
| Gene Alias: | CGS-PDE|PDE2A1|PED2A4|cGSPDE |
| Gene Description: | phosphodiesterase 2A |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
