Difference between revisions of "TSS:Hg 125894.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |ALS20= |
| + | |HNRPA1= | ||
| + | |HNRPA1L3= | ||
| + | |IBMPFD3= | ||
| + | |UP 1= | ||
| + | |all_trans=HGNC:5031 | ||
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=109 |
|end=54280865 | |end=54280865 | ||
| + | |end_of_center_position=54280835 | ||
|entrez_id=3178 | |entrez_id=3178 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
| − | |gene_alias=ALS19 | + | |gene_alias=ALS19{{!}}ALS20{{!}}HNRPA1{{!}}HNRPA1L3{{!}}IBMPFD3{{!}}UP 1{{!}}hnRNP A1{{!}}hnRNP-A1 |
|gene_description=heterogeneous nuclear ribonucleoprotein A1 | |gene_description=heterogeneous nuclear ribonucleoprotein A1 | ||
|gene_id=3178 | |gene_id=3178 | ||
| Line 14: | Line 20: | ||
|gene_source=HGNC:5031 | |gene_source=HGNC:5031 | ||
|gene_symbol=HNRNPA1 | |gene_symbol=HNRNPA1 | ||
| − | |gene_synonyms=ALS20 hnRNP-A1 | + | |gene_synonyms=ALS20 hnRNP-A1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:5031 | |hgnc_mgi_id=HGNC:5031 | ||
| + | |hnRNP A1= | ||
| + | |hnRNP-A1= | ||
|nearest_ensembl=ENSG00000135486 | |nearest_ensembl=ENSG00000135486 | ||
|nearest_promoter_id=NM_002136 | |nearest_promoter_id=NM_002136 | ||
|nearest_refseq=NM_002136 | |nearest_refseq=NM_002136 | ||
|nearest_unigene=Hs.546261 | |nearest_unigene=Hs.546261 | ||
| − | |num_trans= | + | |num_trans=3178 |
|species=human | |species=human | ||
|start=54280804 | |start=54280804 | ||
| + | |start_of_center_position=54280834 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=AB463728 | + | |transcript_name=ENST00000677220.1 AB463728 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_125894.1 | |tss_id=hg_125894.1 | ||
Latest revision as of 02:57, 20 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 54280834 |
|---|---|
| End of the center position in the TSS region: | 54280835 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000677220.1 AB463728 |
|---|---|
| Distance: | 0 |
| Num_trans: | 3178 |
| All_trans: | HGNC:5031 |
TATA-Box annotation
| Distance to TSS: | 109 |
|---|---|
| Nearest PromoterID: | NM_002136 |
| Entrez ID: | 3178 |
| Nearest Unigene: | Hs.546261 |
| Nearest Refseq: | NM_002136 |
| Nearest Ensembl: | ENSG00000135486 |
| Gene Name: | heterogeneous nuclear ribonucleoprotein A1 |
| Gene Alias: | ALS19|ALS20|HNRPA1|HNRPA1L3|IBMPFD3|UP 1|hnRNP A1|hnRNP-A1 |
| Gene Description: | heterogeneous nuclear ribonucleoprotein A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
