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Difference between revisions of "TSS:Hg 125896.1"

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(Created page with "{{TSSDetail |all_trans=ENST00000551665.1:0 uc058ovw.1:0 ENST00000551803.1:29 uc058ovx.1:29 |chr=chr12 |cpg_percent=0.005 |distance=0 |distance_to_tss=5213 |end=54285918 |entre...")
 
 
(2 intermediate revisions by the same user not shown)
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{{TSSDetail
 
{{TSSDetail
|all_trans=ENST00000551665.1:0 uc058ovw.1:0 ENST00000551803.1:29 uc058ovx.1:29
+
|ALS20=
 +
|HNRPA1=
 +
|HNRPA1L3=
 +
|IBMPFD3=
 +
|UP 1=
 +
|all_trans=HGNC:5031
 
|chr=chr12
 
|chr=chr12
 
|cpg_percent=0.005
 
|cpg_percent=0.005
 
|distance=0
 
|distance=0
|distance_to_tss=5213
+
|distance_to_tss=5177
 
|end=54285918
 
|end=54285918
 +
|end_of_center_position=54285904
 
|entrez_id=3178
 
|entrez_id=3178
 
|gc_percent=0.507463
 
|gc_percent=0.507463
|gene_alias=ALS19|ALS20|HNRPA1|HNRPA1L3|IBMPFD3|UP 1|hnRNP A1|hnRNP-A1
+
|gene_alias=ALS19{{!}}ALS20{{!}}HNRPA1{{!}}HNRPA1L3{{!}}IBMPFD3{{!}}UP 1{{!}}hnRNP A1{{!}}hnRNP-A1
 
|gene_description=heterogeneous nuclear ribonucleoprotein A1
 
|gene_description=heterogeneous nuclear ribonucleoprotein A1
 
|gene_id=3178
 
|gene_id=3178
Line 14: Line 20:
 
|gene_source=HGNC:5031
 
|gene_source=HGNC:5031
 
|gene_symbol=HNRNPA1
 
|gene_symbol=HNRNPA1
|gene_synonyms=ALS20 hnRNP-A1 hnRNPA1
+
|gene_synonyms=ALS20 hnRNP-A1
 
|gene_type=protein-coding
 
|gene_type=protein-coding
 
|hgnc_mgi_id=HGNC:5031
 
|hgnc_mgi_id=HGNC:5031
 +
|hnRNP A1=
 +
|hnRNP-A1=
 
|nearest_ensembl=ENSG00000135486
 
|nearest_ensembl=ENSG00000135486
 
|nearest_promoter_id=NM_002136
 
|nearest_promoter_id=NM_002136
 
|nearest_refseq=NM_002136
 
|nearest_refseq=NM_002136
 
|nearest_unigene=Hs.546261
 
|nearest_unigene=Hs.546261
|num_trans=4
+
|num_trans=3178
 
|species=human
 
|species=human
 
|start=54285888
 
|start=54285888
 +
|start_of_center_position=54285903
 
|strand=+
 
|strand=+
|transcript_name=ENST00000551665.1 uc058ovw.1
+
|transcript_name=ENST00000551665.1
 
|tss_classification=no
 
|tss_classification=no
 
|tss_id=hg_125896.1
 
|tss_id=hg_125896.1

Latest revision as of 02:57, 20 July 2021

Basic information about the TSS


TSS ID:hg_125896.1
Species:human
Chr:chr12
TSS Classification:no
Start:54285888
End:54285918
Strand:+
TSS Score:1
Start of the center position in the TSS region:54285903
End of the center position in the TSS region:54285904



Gene and protein annotation


Transcript_name:ENST00000551665.1
Distance:0
GeneID:3178
HGNC/MGI_ID:HGNC:5031
UniProt_ID:
Gene_name:heterogeneous nuclear ribonucleoprotein A1
Gene_symbol:HNRNPA1
Gene_synonyms:ALS20 hnRNP-A1
Gene_source:HGNC:5031



Transcript annotation


Transcript_name:ENST00000551665.1
Distance:0
Num_trans:3178
All_trans:HGNC:5031



TATA-Box annotation


Distance to TSS:5177
Nearest PromoterID:NM_002136
Entrez ID:3178
Nearest Unigene:Hs.546261
Nearest Refseq:NM_002136
Nearest Ensembl:ENSG00000135486
Gene Name:heterogeneous nuclear ribonucleoprotein A1
Gene Alias:ALS19|ALS20|HNRPA1|HNRPA1L3|IBMPFD3|UP 1|hnRNP A1|hnRNP-A1
Gene Description:heterogeneous nuclear ribonucleoprotein A1
Gene Type:protein-coding
CpG%:0.005
GC%:0.507463
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):