Difference between revisions of "TSS:Hg 129649.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000279575.5:88 ENST00000621732.4:88 ENST00000445719.2:88 NM_002723:88 NM_001261399:88 uc001qzt.5:88 uc031qgh.2:88 uc058lgw.1:88 BC128191:88 ENST00...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:9340 |
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=87 |
|distance_to_tss=-96 | |distance_to_tss=-96 | ||
|end=11310539 | |end=11310539 | ||
| + | |end_of_center_position=11310531 | ||
|entrez_id=5545 | |entrez_id=5545 | ||
|gc_percent=0.507463 | |gc_percent=0.507463 | ||
| Line 11: | Line 12: | ||
|gene_description=proline rich protein BstNI subfamily 4 | |gene_description=proline rich protein BstNI subfamily 4 | ||
|gene_id=5545 | |gene_id=5545 | ||
| − | |gene_name=proline | + | |gene_name=proline rich protein BstNI subfamily 4 |
|gene_source=HGNC:9340 | |gene_source=HGNC:9340 | ||
|gene_symbol=PRB4 | |gene_symbol=PRB4 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_002723 | |nearest_refseq=NM_002723 | ||
|nearest_unigene=Hs.528651 | |nearest_unigene=Hs.528651 | ||
| − | |num_trans= | + | |num_trans=5545 |
|species=human | |species=human | ||
|start=11310522 | |start=11310522 | ||
| + | |start_of_center_position=11310530 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=63(CTCTTTATAAAG,-,0.00),65(CTTTATAAAGGG,+,0.00),65(CTTTATAAAGGG,-,0.00) |
| − | |transcript_name=ENST00000279575. | + | |transcript_name=ENST00000279575.7 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_129649.1 | |tss_id=hg_129649.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=E9PAL0 |
}} | }} | ||
Latest revision as of 04:18, 20 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 11310530 |
|---|---|
| End of the center position in the TSS region: | 11310531 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000279575.7 |
|---|---|
| Distance: | 87 |
| Num_trans: | 5545 |
| All_trans: | HGNC:9340 |
TATA-Box annotation
| Distance to TSS: | -96 |
|---|---|
| Nearest PromoterID: | NM_002723 |
| Entrez ID: | 5545 |
| Nearest Unigene: | Hs.528651 |
| Nearest Refseq: | NM_002723 |
| Nearest Ensembl: | ENSG00000230657 |
| Gene Name: | proline rich protein BstNI subfamily 4 |
| Gene Alias: | Po |
| Gene Description: | proline rich protein BstNI subfamily 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.507463 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 63(CTCTTTATAAAG,-,0.00),65(CTTTATAAAGGG,+,0.00),65(CTTTATAAAGGG,-,0.00) |
