Difference between revisions of "TSS:Hg 130418.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:9024 |
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=56 | |distance_to_tss=56 | ||
|end=32896822 | |end=32896822 | ||
| + | |end_of_center_position=32896790 | ||
|entrez_id=5318 | |entrez_id=5318 | ||
|gc_percent=0.81592 | |gc_percent=0.81592 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_004572 | |nearest_refseq=NM_004572 | ||
|nearest_unigene=Hs.164384 | |nearest_unigene=Hs.164384 | ||
| − | |num_trans= | + | |num_trans=5318 |
|species=human | |species=human | ||
|start=32896757 | |start=32896757 | ||
| + | |start_of_center_position=32896789 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=BC094762 BC126199 BC143966 BC143967 | + | |transcript_name=ENST00000340811.9 BC094762 BC126199 BC143966 BC143967 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_130418.1 | |tss_id=hg_130418.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q99959 |
}} | }} | ||
Latest revision as of 04:34, 20 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 32896789 |
|---|---|
| End of the center position in the TSS region: | 32896790 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000340811.9 BC094762 BC126199 BC143966 BC143967 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5318 |
| All_trans: | HGNC:9024 |
TATA-Box annotation
| Distance to TSS: | 56 |
|---|---|
| Nearest PromoterID: | NM_004572 |
| Entrez ID: | 5318 |
| Nearest Unigene: | Hs.164384 |
| Nearest Refseq: | NM_004572 |
| Nearest Ensembl: | ENSG00000057294 |
| Gene Name: | plakophilin 2 |
| Gene Alias: | ARVD9 |
| Gene Description: | plakophilin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.81592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
