Difference between revisions of "TSS:Hg 105405.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |SPL= | ||
| + | |all_trans=LF322578:20 MA558155:20 LF322579:-58 MA558156:-58 AK314615:76 LF322577:92 MA558154:92 AJ011304:-234 AB033078:-296 ENST00000486993.1:-305 BC051238:-305 BC068061:-305 BC052991:-306 ENST00000373202.8:-318 NM_003901:-318 LF385457:-318 MA621034:-318 LF208760:-319 MA444337:-319 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| + | |distance=20 | ||
|distance_to_tss=339 | |distance_to_tss=339 | ||
| + | |end=70816308 | ||
| + | |end_of_center_position=70816287 | ||
|entrez_id=8879 | |entrez_id=8879 | ||
|gc_percent=0.810945 | |gc_percent=0.810945 | ||
| − | |gene_alias=S1PL | + | |gene_alias=NPHS14{{!}}S1PL{{!}}SPL |
|gene_description=sphingosine-1-phosphate lyase 1 | |gene_description=sphingosine-1-phosphate lyase 1 | ||
| + | |gene_id=8879 | ||
|gene_name=SGPL1 | |gene_name=SGPL1 | ||
| + | |gene_source=HGNC:10817 | ||
| + | |gene_symbol=SGPL1 | ||
| + | |gene_synonyms=SPL | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:10817 | ||
|nearest_ensembl=ENSG00000166224 | |nearest_ensembl=ENSG00000166224 | ||
|nearest_promoter_id=NM_003901 | |nearest_promoter_id=NM_003901 | ||
|nearest_refseq=NM_003901 | |nearest_refseq=NM_003901 | ||
|nearest_unigene=Hs.499984 | |nearest_unigene=Hs.499984 | ||
| + | |num_trans=19 | ||
| + | |species=human | ||
| + | |start=70816265 | ||
| + | |start_of_center_position=70816286 | ||
| + | |strand=+ | ||
| + | |transcript_name=LF322578 MA558155 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105405.1 | |tss_id=hg_105405.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 18:13, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 70816286 |
|---|---|
| End of the center position in the TSS region: | 70816287 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF322578 MA558155 |
|---|---|
| Distance: | 20 |
| Num_trans: | 19 |
| All_trans: | LF322578:20 MA558155:20 LF322579:-58 MA558156:-58 AK314615:76 LF322577:92 MA558154:92 AJ011304:-234 AB033078:-296 ENST00000486993.1:-305 BC051238:-305 BC068061:-305 BC052991:-306 ENST00000373202.8:-318 NM_003901:-318 LF385457:-318 MA621034:-318 LF208760:-319 MA444337:-319 |
TATA-Box annotation
| Distance to TSS: | 339 |
|---|---|
| Nearest PromoterID: | NM_003901 |
| Entrez ID: | 8879 |
| Nearest Unigene: | Hs.499984 |
| Nearest Refseq: | NM_003901 |
| Nearest Ensembl: | ENSG00000166224 |
| Gene Name: | SGPL1 |
| Gene Alias: | NPHS14|S1PL|SPL |
| Gene Description: | sphingosine-1-phosphate lyase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.810945 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
