Difference between revisions of "TSS:Hg 134755.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000537702.5:0 NM_001204197:0 uc010tef.3:0 AK294737:0 AK315939:79 |chr=chr13 |cpg_percent=0.04 |distance=0 |distance_to_tss=-2 |end=35476750 |entre...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |LYST2= |
| + | |all_trans=HGNC:7648 | ||
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=-2 | |distance_to_tss=-2 | ||
|end=35476750 | |end=35476750 | ||
| + | |end_of_center_position=35476748 | ||
|entrez_id=26960 | |entrez_id=26960 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
| − | |gene_alias=BCL8B | + | |gene_alias=BCL8B{{!}}LYST2 |
|gene_description=neurobeachin | |gene_description=neurobeachin | ||
|gene_id=26960 | |gene_id=26960 | ||
| Line 21: | Line 23: | ||
|nearest_refseq=NM_015678 | |nearest_refseq=NM_015678 | ||
|nearest_unigene=Hs.491172 | |nearest_unigene=Hs.491172 | ||
| − | |num_trans= | + | |num_trans=26960 |
|species=human | |species=human | ||
|start=35476744 | |start=35476744 | ||
| + | |start_of_center_position=35476747 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000537702.5 | + | |transcript_name=ENST00000537702.5 AK294737 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_134755.1 | |tss_id=hg_134755.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Latest revision as of 06:09, 20 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 35476747 |
|---|---|
| End of the center position in the TSS region: | 35476748 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000537702.5 AK294737 |
|---|---|
| Distance: | 0 |
| Num_trans: | 26960 |
| All_trans: | HGNC:7648 |
TATA-Box annotation
| Distance to TSS: | -2 |
|---|---|
| Nearest PromoterID: | NM_001204197 |
| Entrez ID: | 26960 |
| Nearest Unigene: | Hs.491172 |
| Nearest Refseq: | NM_015678 |
| Nearest Ensembl: | ENSG00000172915 |
| Gene Name: | neurobeachin |
| Gene Alias: | BCL8B|LYST2 |
| Gene Description: | neurobeachin |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
