Difference between revisions of "TSS:Hg 136496.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000381116.5:-22 uc001urk.4:-22 AF265440:-22 ENST00000381120.7:-32 uc001urj.4:-32 BC046166:-32 ENST00000484342.2:-45 uc058wbi.1:-45 ENST00000485650...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:29788 |
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=65 | |distance_to_tss=65 | ||
|end=27450542 | |end=27450542 | ||
| + | |end_of_center_position=27450538 | ||
|entrez_id=219402 | |entrez_id=219402 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_152912 | |nearest_refseq=NM_152912 | ||
|nearest_unigene=Hs.534582 | |nearest_unigene=Hs.534582 | ||
| − | |num_trans= | + | |num_trans=219402 |
|species=human | |species=human | ||
|start=27450532 | |start=27450532 | ||
| + | |start_of_center_position=27450537 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-86(TTCCTTTAAAGG,-,0.00),-85(TCCTTTAAAGGA,+,0.00),-85(TCCTTTAAAGGA,-,0.00),-84(CCTTTAAAGGAC,+,0.00) |
| − | |transcript_name=ENST00000381116.5 | + | |transcript_name=ENST00000381116.5 ENST00000381120.8 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_136496.1 | |tss_id=hg_136496.1 | ||
Latest revision as of 06:46, 20 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 27450537 |
|---|---|
| End of the center position in the TSS region: | 27450538 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000381116.5 ENST00000381120.8 |
|---|---|
| Distance: | -22 |
| Num_trans: | 219402 |
| All_trans: | HGNC:29788 |
TATA-Box annotation
| Distance to TSS: | 65 |
|---|---|
| Nearest PromoterID: | NM_001166263 |
| Entrez ID: | 219402 |
| Nearest Unigene: | Hs.534582 |
| Nearest Refseq: | NM_152912 |
| Nearest Ensembl: | ENSG00000122033 |
| Gene Name: | mitochondrial translational initiation factor 3 |
| Gene Alias: | IF3mt |
| Gene Description: | mitochondrial translational initiation factor 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -86(TTCCTTTAAAGG,-,0.00),-85(TCCTTTAAAGGA,+,0.00),-85(TCCTTTAAAGGA,-,0.00),-84(CCTTTAAAGGAC,+,0.00) |
