Difference between revisions of "TSS:Hg 105840.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=13741 |entrez_id=6441 |gc_percent=0.472637 |gene_alias=COLEC7|PSP-D|SFTP4|SP-D |gene_description=surfactant protein D |gene_nam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PSP-D= | ||
| + | |SFTP4= | ||
| + | |SP-D= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=NA | ||
|distance_to_tss=13741 | |distance_to_tss=13741 | ||
| + | |end=79935364 | ||
| + | |end_of_center_position=79935364 | ||
|entrez_id=6441 | |entrez_id=6441 | ||
|gc_percent=0.472637 | |gc_percent=0.472637 | ||
| − | |gene_alias=COLEC7 | + | |gene_alias=COLEC7{{!}}PSP-D{{!}}SFTP4{{!}}SP-D |
|gene_description=surfactant protein D | |gene_description=surfactant protein D | ||
|gene_name=SFTPD | |gene_name=SFTPD | ||
| Line 12: | Line 19: | ||
|nearest_refseq=NM_003019 | |nearest_refseq=NM_003019 | ||
|nearest_unigene=Hs.253495 | |nearest_unigene=Hs.253495 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=79935363 | ||
| + | |start_of_center_position=79935363 | ||
| + | |strand=+ | ||
| + | |tata_box=60(TCCTTTTTAAGC,-,0.00),62(CTTTTTAAGCCC,+,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_105840.1 | |tss_id=hg_105840.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:23, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 79935363 |
|---|---|
| End of the center position in the TSS region: | 79935364 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 13741 |
|---|---|
| Nearest PromoterID: | NM_003019 |
| Entrez ID: | 6441 |
| Nearest Unigene: | Hs.253495 |
| Nearest Refseq: | NM_003019 |
| Nearest Ensembl: | ENSG00000133661 |
| Gene Name: | SFTPD |
| Gene Alias: | COLEC7|PSP-D|SFTP4|SP-D |
| Gene Description: | surfactant protein D |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.472637 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 60(TCCTTTTTAAGC,-,0.00),62(CTTTTTAAGCCC,+,0.00) |
