Difference between revisions of "TSS:Hg 232494.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|SPG33= | |SPG33= | ||
| − | |all_trans= | + | |all_trans=LF206763:3 MA442340:3 LF213893:6 MA449470:6 ENST00000649529.1:29 NM_005101:29 M13755:31 LP895696:-44 BC009507:65 |
| − | |chr= | + | |chr=chr1 |
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance= | + | |distance=3 |
|distance_to_tss=76 | |distance_to_tss=76 | ||
| − | |end= | + | |end=1013468 |
|end_of_center_position=1013468 | |end_of_center_position=1013468 | ||
|entrez_id=118813 | |entrez_id=118813 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
| − | |gene_alias=PROTRUDIN | + | |gene_alias=PROTRUDIN{{!}}SPG33 |
|gene_description=zinc finger FYVE-type containing 27 | |gene_description=zinc finger FYVE-type containing 27 | ||
|gene_id=118813 | |gene_id=118813 | ||
| − | |gene_name= | + | |gene_name=ZFYVE27 |
|gene_source=HGNC:26559 | |gene_source=HGNC:26559 | ||
|gene_symbol=ZFYVE27 | |gene_symbol=ZFYVE27 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_144588 | |nearest_refseq=NM_144588 | ||
|nearest_unigene=Hs.744075 | |nearest_unigene=Hs.744075 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
| − | |start= | + | |start=1013466 |
|start_of_center_position=1013467 | |start_of_center_position=1013467 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF206763 MA442340 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_232494.1 | |tss_id=hg_232494.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 08:38, 14 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 1013467 |
|---|---|
| End of the center position in the TSS region: | 1013468 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF206763 MA442340 |
|---|---|
| Distance: | 3 |
| Num_trans: | 9 |
| All_trans: | LF206763:3 MA442340:3 LF213893:6 MA449470:6 ENST00000649529.1:29 NM_005101:29 M13755:31 LP895696:-44 BC009507:65 |
TATA-Box annotation
| Distance to TSS: | 76 |
|---|---|
| Nearest PromoterID: | NM_001002261 |
| Entrez ID: | 118813 |
| Nearest Unigene: | Hs.744075 |
| Nearest Refseq: | NM_144588 |
| Nearest Ensembl: | ENSG00000155256 |
| Gene Name: | ZFYVE27 |
| Gene Alias: | PROTRUDIN|SPG33 |
| Gene Description: | zinc finger FYVE-type containing 27 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
