Difference between revisions of "TSS:Hg 140411.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AB464295:71 BC160145:71 BC047950:-84 ENST00000256367.2:-262 NM_015351:-262 uc001xmi.2:-262 D86980:-262 |chr=chr14 |cpg_percent=0.185 |distance=71 |dista...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:20267 |
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.185 | |cpg_percent=0.185 | ||
|distance=71 | |distance=71 | ||
| − | |distance_to_tss= | + | |distance_to_tss=138 |
|end=70642059 | |end=70642059 | ||
| + | |end_of_center_position=70642054 | ||
|entrez_id=23508 | |entrez_id=23508 | ||
|gc_percent=0.79602 | |gc_percent=0.79602 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_015351 | |nearest_refseq=NM_015351 | ||
|nearest_unigene=Hs.79170 | |nearest_unigene=Hs.79170 | ||
| − | |num_trans= | + | |num_trans=23508 |
|species=human | |species=human | ||
|start=70642048 | |start=70642048 | ||
| + | |start_of_center_position=70642053 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-6(GCTTTTAAACCC,+,0.00) |
|transcript_name=AB464295 BC160145 | |transcript_name=AB464295 BC160145 | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 08:12, 20 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 70642053 |
|---|---|
| End of the center position in the TSS region: | 70642054 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB464295 BC160145 |
|---|---|
| Distance: | 71 |
| Num_trans: | 23508 |
| All_trans: | HGNC:20267 |
TATA-Box annotation
| Distance to TSS: | 138 |
|---|---|
| Nearest PromoterID: | NM_015351 |
| Entrez ID: | 23508 |
| Nearest Unigene: | Hs.79170 |
| Nearest Refseq: | NM_015351 |
| Nearest Ensembl: | ENSG00000133985 |
| Gene Name: | tetratricopeptide repeat domain 9 |
| Gene Alias: | TTC9A |
| Gene Description: | tetratricopeptide repeat domain 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.185 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -6(GCTTTTAAACCC,+,0.00) |
