Difference between revisions of "TSS:Hg 106157.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.04 |distance_to_tss=-221 |entrez_id=53354 |gc_percent=0.537313 |gene_alias=PANK |gene_description=pantothenate kinase 1 |gene_name=PANK1 |gene_type=...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance_to_tss=- | + | |distance=NA |
| + | |distance_to_tss=-196 | ||
| + | |end=89644123 | ||
| + | |end_of_center_position=89644113 | ||
|entrez_id=53354 | |entrez_id=53354 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
| Line 9: | Line 13: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000152782 | |nearest_ensembl=ENSG00000152782 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_148978 |
|nearest_refseq=NM_138316 | |nearest_refseq=NM_138316 | ||
|nearest_unigene=Hs.163555 | |nearest_unigene=Hs.163555 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=89644101 | ||
| + | |start_of_center_position=89644112 | ||
| + | |strand=+ | ||
| + | |tata_box=-56(CTTCTAATAGGC,+,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106157.1 | |tss_id=hg_106157.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:31, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 89644112 |
|---|---|
| End of the center position in the TSS region: | 89644113 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -196 |
|---|---|
| Nearest PromoterID: | NM_148978 |
| Entrez ID: | 53354 |
| Nearest Unigene: | Hs.163555 |
| Nearest Refseq: | NM_138316 |
| Nearest Ensembl: | ENSG00000152782 |
| Gene Name: | PANK1 |
| Gene Alias: | PANK |
| Gene Description: | pantothenate kinase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -56(CTTCTAATAGGC,+,0.00) |
