Difference between revisions of "TSS:Hg 100418.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |SMU-1= | ||
| + | |all_trans=LP895622:6 ENST00000397149.4:52 NM_018225:52 AK225559:55 AK304767:59 AK225587:61 BC002876:74 EF011613:74 AK001667:80 KJ894162:116 DQ893005:118 DQ896251:118 CU678268:118 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| − | |distance_to_tss=- | + | |distance=6 |
| + | |distance_to_tss=-57 | ||
| + | |end=33076736 | ||
| + | |end_of_center_position=33076731 | ||
|entrez_id=55234 | |entrez_id=55234 | ||
| + | |fSAP57= | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
| − | |gene_alias=BWD | + | |gene_alias=BWD{{!}}SMU-1{{!}}fSAP57 |
| − | |gene_description=DNA replication regulator and spliceosomal factor | + | |gene_description=SMU1 DNA replication regulator and spliceosomal factor |
| + | |gene_id=55234 | ||
|gene_name=SMU1 | |gene_name=SMU1 | ||
| + | |gene_source=HGNC:18247 | ||
| + | |gene_symbol=SMU1 | ||
| + | |gene_synonyms=BWD FLJ10805 SMU-1 fSAP57 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:18247 | ||
|nearest_ensembl=ENSG00000122692 | |nearest_ensembl=ENSG00000122692 | ||
|nearest_promoter_id=NM_018225 | |nearest_promoter_id=NM_018225 | ||
|nearest_refseq=NM_018225 | |nearest_refseq=NM_018225 | ||
|nearest_unigene=Hs.655351 | |nearest_unigene=Hs.655351 | ||
| + | |num_trans=13 | ||
| + | |species=human | ||
| + | |start=33076725 | ||
| + | |start_of_center_position=33076730 | ||
| + | |strand=- | ||
| + | |transcript_name=LP895622 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100418.1 | |tss_id=hg_100418.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 16:17, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 33076730 |
|---|---|
| End of the center position in the TSS region: | 33076731 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LP895622 |
|---|---|
| Distance: | 6 |
| Num_trans: | 13 |
| All_trans: | LP895622:6 ENST00000397149.4:52 NM_018225:52 AK225559:55 AK304767:59 AK225587:61 BC002876:74 EF011613:74 AK001667:80 KJ894162:116 DQ893005:118 DQ896251:118 CU678268:118 |
TATA-Box annotation
| Distance to TSS: | -57 |
|---|---|
| Nearest PromoterID: | NM_018225 |
| Entrez ID: | 55234 |
| Nearest Unigene: | Hs.655351 |
| Nearest Refseq: | NM_018225 |
| Nearest Ensembl: | ENSG00000122692 |
| Gene Name: | SMU1 |
| Gene Alias: | BWD|SMU-1|fSAP57 |
| Gene Description: | SMU1 DNA replication regulator and spliceosomal factor |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
