Difference between revisions of "TSS:Hg 95536.1"
From referenceTSS
| Line 3: | Line 3: | ||
|SCRIB1= | |SCRIB1= | ||
|Vartul= | |Vartul= | ||
| − | |all_trans=ENST00000356994. | + | |all_trans=LF214026:-97 MA449603:-97 ENST00000356994.7:-141 NM_015356:-141 NM_182706:-141 LF210317:-155 MA445894:-155 ENST00000320476.7:235 ENST00000674084.1:235 AY062238:235 BC146321:238 AB383767:239 D63481:240 AF240677:242 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
| − | |distance= | + | |distance=-97 |
| − | |distance_to_tss= | + | |distance_to_tss=150 |
|end=143815632 | |end=143815632 | ||
|end_of_center_position=143815623 | |end_of_center_position=143815623 | ||
|entrez_id=23513 | |entrez_id=23513 | ||
|gc_percent=0.79602 | |gc_percent=0.79602 | ||
| − | |gene_alias=CRIB1 | + | |gene_alias=CRIB1{{!}}SCRB1{{!}}SCRIB1{{!}}Vartul |
| − | |gene_description= | + | |gene_description=scribble planar cell polarity protein |
|gene_id=23513 | |gene_id=23513 | ||
| − | |gene_name= | + | |gene_name=SCRIB |
|gene_source=HGNC:30377 | |gene_source=HGNC:30377 | ||
|gene_symbol=SCRIB | |gene_symbol=SCRIB | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:30377 | |hgnc_mgi_id=HGNC:30377 | ||
|nearest_ensembl=ENSG00000180900 | |nearest_ensembl=ENSG00000180900 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_182706 |
|nearest_refseq=NM_015356 | |nearest_refseq=NM_015356 | ||
|nearest_unigene=Hs.436329 | |nearest_unigene=Hs.436329 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=human | |species=human | ||
|start=143815613 | |start=143815613 | ||
|start_of_center_position=143815622 | |start_of_center_position=143815622 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF214026 MA449603 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_95536.1 | |tss_id=hg_95536.1 | ||
Latest revision as of 20:32, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 143815622 |
|---|---|
| End of the center position in the TSS region: | 143815623 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF214026 MA449603 |
|---|---|
| Distance: | -97 |
| Num_trans: | 14 |
| All_trans: | LF214026:-97 MA449603:-97 ENST00000356994.7:-141 NM_015356:-141 NM_182706:-141 LF210317:-155 MA445894:-155 ENST00000320476.7:235 ENST00000674084.1:235 AY062238:235 BC146321:238 AB383767:239 D63481:240 AF240677:242 |
TATA-Box annotation
| Distance to TSS: | 150 |
|---|---|
| Nearest PromoterID: | NM_182706 |
| Entrez ID: | 23513 |
| Nearest Unigene: | Hs.436329 |
| Nearest Refseq: | NM_015356 |
| Nearest Ensembl: | ENSG00000180900 |
| Gene Name: | SCRIB |
| Gene Alias: | CRIB1|SCRB1|SCRIB1|Vartul |
| Gene Description: | scribble planar cell polarity protein |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
