Difference between revisions of "TSS:Hg 106380.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.12 |distance_to_tss=-99 |entrez_id=9849 |gc_percent=0.706468 |gene_alias=ZNF518 |gene_description=zinc finger protein 518A |gene_name=ZNF518A |gene_...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=LF345593:-36 MA581170:-36 NM_001330734:81 ENST00000484770.1:138 NM_001330738:-226 NM_001330737:-226 NM_001330736:-226 NM_001330735:-226 NM_001330733:-226 LF345592:-375 MA581169:-375 LF345594:427 MA581171:427 ENST00000563195.1:-434 ENST00000539666.5:-450 ENST00000478086.5:-450 ENST00000624776.3:-450 NM_001278525:-450 NM_001330732:-450 AK095317:-450 BC030967:-450 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| + | |distance=-36 | ||
|distance_to_tss=-99 | |distance_to_tss=-99 | ||
| + | |end=96130541 | ||
| + | |end_of_center_position=96130524 | ||
|entrez_id=9849 | |entrez_id=9849 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
|gene_alias=ZNF518 | |gene_alias=ZNF518 | ||
|gene_description=zinc finger protein 518A | |gene_description=zinc finger protein 518A | ||
| + | |gene_id=9849 | ||
|gene_name=ZNF518A | |gene_name=ZNF518A | ||
| + | |gene_source=HGNC:29009 | ||
| + | |gene_symbol=ZNF518A | ||
| + | |gene_synonyms=KIAA0335 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:29009 | ||
|nearest_ensembl=ENSG00000177853 | |nearest_ensembl=ENSG00000177853 | ||
|nearest_promoter_id=NM_001330734 | |nearest_promoter_id=NM_001330734 | ||
|nearest_refseq=NM_014803 | |nearest_refseq=NM_014803 | ||
|nearest_unigene=Hs.600823 | |nearest_unigene=Hs.600823 | ||
| + | |num_trans=21 | ||
| + | |species=human | ||
| + | |start=96130505 | ||
| + | |start_of_center_position=96130523 | ||
| + | |strand=+ | ||
| + | |transcript_name=LF345593 MA581170 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106380.1 | |tss_id=hg_106380.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 18:36, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 96130523 |
|---|---|
| End of the center position in the TSS region: | 96130524 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF345593 MA581170 |
|---|---|
| Distance: | -36 |
| Num_trans: | 21 |
| All_trans: | LF345593:-36 MA581170:-36 NM_001330734:81 ENST00000484770.1:138 NM_001330738:-226 NM_001330737:-226 NM_001330736:-226 NM_001330735:-226 NM_001330733:-226 LF345592:-375 MA581169:-375 LF345594:427 MA581171:427 ENST00000563195.1:-434 ENST00000539666.5:-450 ENST00000478086.5:-450 ENST00000624776.3:-450 NM_001278525:-450 NM_001330732:-450 AK095317:-450 BC030967:-450 |
TATA-Box annotation
| Distance to TSS: | -99 |
|---|---|
| Nearest PromoterID: | NM_001330734 |
| Entrez ID: | 9849 |
| Nearest Unigene: | Hs.600823 |
| Nearest Refseq: | NM_014803 |
| Nearest Ensembl: | ENSG00000177853 |
| Gene Name: | ZNF518A |
| Gene Alias: | ZNF518 |
| Gene Description: | zinc finger protein 518A |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
