Difference between revisions of "TSS:Hg 101563.1"
From referenceTSS
| Line 8: | Line 8: | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=11967 | |distance_to_tss=11967 | ||
|end=95495235 | |end=95495235 | ||
| Line 14: | Line 14: | ||
|entrez_id=5727 | |entrez_id=5727 | ||
|gc_percent=0.492537 | |gc_percent=0.492537 | ||
| − | |gene_alias=BCNS | + | |gene_alias=BCNS{{!}}NBCCS{{!}}PTC{{!}}PTC1{{!}}PTCH |
|gene_description=patched 1 | |gene_description=patched 1 | ||
|gene_name=PTCH1 | |gene_name=PTCH1 | ||
| Line 27: | Line 27: | ||
|start_of_center_position=95495231 | |start_of_center_position=95495231 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-34(GGCTATAAGAAG,-,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 16:43, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 95495231 |
|---|---|
| End of the center position in the TSS region: | 95495232 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 11967 |
|---|---|
| Nearest PromoterID: | NM_001083607 |
| Entrez ID: | 5727 |
| Nearest Unigene: | Hs.494538 |
| Nearest Refseq: | NM_000264 |
| Nearest Ensembl: | ENSG00000185920 |
| Gene Name: | PTCH1 |
| Gene Alias: | BCNS|NBCCS|PTC|PTC1|PTCH |
| Gene Description: | patched 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.492537 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(GGCTATAAGAAG,-,0.00) |
