Difference between revisions of "TSS:Hg 6355.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:8632 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=12 |
|distance_to_tss=-200 | |distance_to_tss=-200 | ||
|end=164559172 | |end=164559172 | ||
| Line 9: | Line 9: | ||
|entrez_id=5087 | |entrez_id=5087 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
| − | |gene_alias= | + | |gene_alias=CAKUHED |
|gene_description=PBX homeobox 1 | |gene_description=PBX homeobox 1 | ||
|gene_id=5087 | |gene_id=5087 | ||
| − | |gene_name= | + | |gene_name=PBX homeobox 1 |
|gene_source=HGNC:8632 | |gene_source=HGNC:8632 | ||
|gene_symbol=PBX1 | |gene_symbol=PBX1 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:8632 | |hgnc_mgi_id=HGNC:8632 | ||
|nearest_ensembl=ENSG00000185630 | |nearest_ensembl=ENSG00000185630 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001353131 |
|nearest_refseq=NM_002585 | |nearest_refseq=NM_002585 | ||
|nearest_unigene=Hs.557097 | |nearest_unigene=Hs.557097 | ||
| − | |num_trans= | + | |num_trans=5087 |
|species=human | |species=human | ||
|start=164559147 | |start=164559147 | ||
|start_of_center_position=164559159 | |start_of_center_position=164559159 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000420696.7 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_6355.1 | |tss_id=hg_6355.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A1MJ41 P40424 |
}} | }} | ||
Latest revision as of 05:33, 22 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 164559159 |
|---|---|
| End of the center position in the TSS region: | 164559160 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000420696.7 |
|---|---|
| Distance: | 12 |
| Num_trans: | 5087 |
| All_trans: | HGNC:8632 |
TATA-Box annotation
| Distance to TSS: | -200 |
|---|---|
| Nearest PromoterID: | NM_001353131 |
| Entrez ID: | 5087 |
| Nearest Unigene: | Hs.557097 |
| Nearest Refseq: | NM_002585 |
| Nearest Ensembl: | ENSG00000185630 |
| Gene Name: | PBX homeobox 1 |
| Gene Alias: | CAKUHED |
| Gene Description: | PBX homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
