Difference between revisions of "TSS:Hg 233700.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:16951 |
| − | |chr= | + | |chr=chr1 |
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=297 |
|distance_to_tss=-59 | |distance_to_tss=-59 | ||
| − | |end= | + | |end=185298220 |
|end_of_center_position=185298216 | |end_of_center_position=185298216 | ||
|entrez_id=619565 | |entrez_id=619565 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
|gene_alias=ACA52 | |gene_alias=ACA52 | ||
| − | |gene_description= | + | |gene_description=small nucleolar RNA, H/ACA box 52 |
| − | |gene_id= | + | |gene_id=10625 |
| − | |gene_name= | + | |gene_name=influenza virus NS1A binding protein |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:16951 |
| − | |gene_symbol= | + | |gene_symbol=IVNS1ABP |
| − | |gene_synonyms= | + | |gene_synonyms=ARA3 HSPC068 KIAA0850 KLHL39 ND1 NS-1 NS1-BP |
|gene_type=snoRNA | |gene_type=snoRNA | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:16951 |
|nearest_ensembl=ENSG00000199785 | |nearest_ensembl=ENSG00000199785 | ||
|nearest_promoter_id=NR_002585 | |nearest_promoter_id=NR_002585 | ||
|nearest_refseq=NR_002585 | |nearest_refseq=NR_002585 | ||
|nearest_unigene=Hs.689713 | |nearest_unigene=Hs.689713 | ||
| − | |num_trans= | + | |num_trans=10625 |
|species=human | |species=human | ||
| − | |start= | + | |start=185298210 |
|start_of_center_position=185298215 | |start_of_center_position=185298215 | ||
| − | |strand= | + | |strand=- |
| − | |transcript_name= | + | |transcript_name=AL137640 |
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_233700.1 | |tss_id=hg_233700.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 11:38, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 185298215 |
|---|---|
| End of the center position in the TSS region: | 185298216 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AL137640 |
|---|---|
| Distance: | 297 |
| Num_trans: | 10625 |
| All_trans: | HGNC:16951 |
TATA-Box annotation
| Distance to TSS: | -59 |
|---|---|
| Nearest PromoterID: | NR_002585 |
| Entrez ID: | 619565 |
| Nearest Unigene: | Hs.689713 |
| Nearest Refseq: | NR_002585 |
| Nearest Ensembl: | ENSG00000199785 |
| Gene Name: | influenza virus NS1A binding protein |
| Gene Alias: | ACA52 |
| Gene Description: | small nucleolar RNA, H/ACA box 52 |
| Gene Type: | snoRNA |
| CpG%: | 0.03 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
