Difference between revisions of "TSS:Hg 243451.1"
From referenceTSS
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|MIF2= | |MIF2= | ||
|all_trans=NM_005347:-16 X87949:20 AK293604:25 ENST00000324460.6:38 uc004bpn.4:38 BC020235:38 AJ271729:229 EU794617:229 AF216292:242 DQ892173:242 DQ895368:242 AB527282:242 AF188611:298 | |all_trans=NM_005347:-16 X87949:20 AK293604:25 ENST00000324460.6:38 uc004bpn.4:38 BC020235:38 AJ271729:229 EU794617:229 AF216292:242 DQ892173:242 DQ895368:242 AB527282:242 AF188611:298 | ||
| − | |chr= | + | |chr=chrM |
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=-26 |
| − | |end= | + | |end=1470 |
|end_of_center_position=1463 | |end_of_center_position=1463 | ||
|entrez_id=3309 | |entrez_id=3309 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
| − | |gene_alias=BIP | + | |gene_alias=BIP{{!}}GRP78{{!}}HEL-S-89n{{!}}MIF2 |
|gene_description=heat shock protein family A (Hsp70) member 5 | |gene_description=heat shock protein family A (Hsp70) member 5 | ||
|gene_id=3309 | |gene_id=3309 | ||
| − | |gene_name= | + | |gene_name=HSPA5 |
|gene_source=HGNC:5238 | |gene_source=HGNC:5238 | ||
|gene_symbol=HSPA5 | |gene_symbol=HSPA5 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_005347 | |nearest_refseq=NM_005347 | ||
|nearest_unigene=Hs.743241 | |nearest_unigene=Hs.743241 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
| − | |start= | + | |start=1454 |
|start_of_center_position=1462 | |start_of_center_position=1462 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-7(GGGTATATAAGC,-,0.00) |
| − | |transcript_name= | + | |transcript_name= |
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_243451.1 | |tss_id=hg_243451.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=V9HWB4 | |uniprot_id=V9HWB4 | ||
}} | }} | ||
Latest revision as of 12:51, 14 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 1462 |
|---|---|
| End of the center position in the TSS region: | 1463 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | NM_005347:-16 X87949:20 AK293604:25 ENST00000324460.6:38 uc004bpn.4:38 BC020235:38 AJ271729:229 EU794617:229 AF216292:242 DQ892173:242 DQ895368:242 AB527282:242 AF188611:298 |
TATA-Box annotation
| Distance to TSS: | -26 |
|---|---|
| Nearest PromoterID: | NM_005347 |
| Entrez ID: | 3309 |
| Nearest Unigene: | Hs.743241 |
| Nearest Refseq: | NM_005347 |
| Nearest Ensembl: | ENSG00000044574 |
| Gene Name: | HSPA5 |
| Gene Alias: | BIP|GRP78|HEL-S-89n|MIF2 |
| Gene Description: | heat shock protein family A (Hsp70) member 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -7(GGGTATATAAGC,-,0.00) |
