Difference between revisions of "TSS:Hg 243536.1"
From referenceTSS
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|NTE-R1= | |NTE-R1= | ||
|NTEL1= | |NTEL1= | ||
| − | |all_trans= | + | |all_trans=DQ596276:63 AB462505:-227 DQ598641:291 AB026838:291 LX251243:291 LZ235584:291 S55822:291 ENST00000361390.2:368 LP790444:368 AK074482:368 LP790447:368 LP790441:368 BC017294:382 BC061915:383 BC009316:-405 AF216862:409 |
| − | |chr= | + | |chr=chrM |
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=63 |
| − | |distance_to_tss= | + | |distance_to_tss=27694 |
| − | |end= | + | |end=2939 |
|end_of_center_position=2939 | |end_of_center_position=2939 | ||
|entrez_id=375775 | |entrez_id=375775 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
| − | |gene_alias=C9orf111 | + | |gene_alias=C9orf111{{!}}NTE-R1{{!}}NTEL1 |
|gene_description=patatin like phospholipase domain containing 7 | |gene_description=patatin like phospholipase domain containing 7 | ||
|gene_id=375775 | |gene_id=375775 | ||
| − | |gene_name= | + | |gene_name=PNPLA7 |
|gene_source=HGNC:24768 | |gene_source=HGNC:24768 | ||
|gene_symbol=PNPLA7 | |gene_symbol=PNPLA7 | ||
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|hgnc_mgi_id=HGNC:24768 | |hgnc_mgi_id=HGNC:24768 | ||
|nearest_ensembl=ENSG00000130653 | |nearest_ensembl=ENSG00000130653 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_152286 |
|nearest_refseq=NM_152286 | |nearest_refseq=NM_152286 | ||
|nearest_unigene=Hs.294147 | |nearest_unigene=Hs.294147 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
| − | |start= | + | |start=2938 |
|start_of_center_position=2938 | |start_of_center_position=2938 | ||
| − | |strand= | + | |strand=+ |
| − | |transcript_name= | + | |transcript_name=DQ596276 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243536.1 | |tss_id=hg_243536.1 | ||
Latest revision as of 12:52, 14 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 2938 |
|---|---|
| End of the center position in the TSS region: | 2939 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | DQ596276 |
|---|---|
| Distance: | 63 |
| Num_trans: | 16 |
| All_trans: | DQ596276:63 AB462505:-227 DQ598641:291 AB026838:291 LX251243:291 LZ235584:291 S55822:291 ENST00000361390.2:368 LP790444:368 AK074482:368 LP790447:368 LP790441:368 BC017294:382 BC061915:383 BC009316:-405 AF216862:409 |
TATA-Box annotation
| Distance to TSS: | 27694 |
|---|---|
| Nearest PromoterID: | NM_152286 |
| Entrez ID: | 375775 |
| Nearest Unigene: | Hs.294147 |
| Nearest Refseq: | NM_152286 |
| Nearest Ensembl: | ENSG00000130653 |
| Gene Name: | PNPLA7 |
| Gene Alias: | C9orf111|NTE-R1|NTEL1 |
| Gene Description: | patatin like phospholipase domain containing 7 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
