Difference between revisions of "TSS:Hg 231685.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK074742:4 | + | |all_trans=AK074742:4 BC024102:229 S75896:-265 S75895:-290 BX648054:321 ENST00000361624.2:324 LP790408:324 LP790409:324 LP790410:324 LP803414:324 LP803415:324 LP803416:324 LY485905:324 LY485906:324 LY485907:324 |
|chr=chrM | |chr=chrM | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=4 | |distance=4 | ||
| − | |distance_to_tss= | + | |distance_to_tss=1942 |
|end=5580 | |end=5580 | ||
|end_of_center_position=5572 | |end_of_center_position=5572 | ||
| − | |entrez_id= | + | |entrez_id=113219467 |
|gc_percent=0.38806 | |gc_percent=0.38806 | ||
| − | |gene_alias= | + | |gene_alias=- |
| − | |gene_description= | + | |gene_description=microRNA 12136 |
| − | |gene_name= | + | |gene_id=107075141 |
| − | |gene_type= | + | |gene_name=MT-CO1 pseudogene 12 |
| + | |gene_source=HGNC:52014 | ||
| + | |gene_symbol=MTCO1P12 | ||
| + | |gene_synonyms= | ||
| + | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:52014 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_162149 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_162149 |
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=5563 | |start=5563 | ||
|start_of_center_position=5571 | |start_of_center_position=5571 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-82(CCTTTTATACTA,+,0.00) |
|transcript_name=AK074742 | |transcript_name=AK074742 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_231685.1 | |tss_id=hg_231685.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 12:06, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 5571 |
|---|---|
| End of the center position in the TSS region: | 5572 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK074742 |
|---|---|
| Distance: | 4 |
| Num_trans: | 15 |
| All_trans: | AK074742:4 BC024102:229 S75896:-265 S75895:-290 BX648054:321 ENST00000361624.2:324 LP790408:324 LP790409:324 LP790410:324 LP803414:324 LP803415:324 LP803416:324 LY485905:324 LY485906:324 LY485907:324 |
TATA-Box annotation
| Distance to TSS: | 1942 |
|---|---|
| Nearest PromoterID: | NR_162149 |
| Entrez ID: | 113219467 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_162149 |
| Nearest Ensembl: | |
| Gene Name: | MT-CO1 pseudogene 12 |
| Gene Alias: | - |
| Gene Description: | microRNA 12136 |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.38806 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -82(CCTTTTATACTA,+,0.00) |
