Personal tools

Difference between revisions of "TSS:Hg 109297.1"

From referenceTSS

Jump to: navigation, search
 
(One intermediate revision by the same user not shown)
Line 2: Line 2:
 
|PDZK4=
 
|PDZK4=
 
|PDZK5C=
 
|PDZK5C=
|all_trans=ENST00000374201.7:0 uc001jgi.5:0 CR749241:0 NM_001018071:-18 AK303923:188 ENST00000486151.5:191 uc057tcm.1:191 AK131386:191 BC156408:300 BC157131:300
+
|all_trans=HGNC:28572
 
|chr=chr10
 
|chr=chr10
 
|cpg_percent=0.02
 
|cpg_percent=0.02
 
|distance=0
 
|distance=0
|distance_to_tss=26
+
|distance_to_tss=-176
 
|end=48274880
 
|end=48274880
 
|end_of_center_position=48274873
 
|end_of_center_position=48274873
 
|entrez_id=143162
 
|entrez_id=143162
 
|gc_percent=0.567164
 
|gc_percent=0.567164
|gene_alias=PDZD5C
+
|gene_alias=PDZD5C{{!}}PDZK4{{!}}PDZK5C
 
|gene_description=FERM and PDZ domain containing 2
 
|gene_description=FERM and PDZ domain containing 2
 
|gene_id=143162
 
|gene_id=143162
Line 24: Line 24:
 
|nearest_refseq=NM_152428
 
|nearest_refseq=NM_152428
 
|nearest_unigene=Hs.664786
 
|nearest_unigene=Hs.664786
|num_trans=10
+
|num_trans=143162
 
|species=human
 
|species=human
 
|start=48274864
 
|start=48274864
 
|start_of_center_position=48274872
 
|start_of_center_position=48274872
 
|strand=-
 
|strand=-
|transcript_name=ENST00000374201.7 uc001jgi.5 CR749241
+
|transcript_name=CR749241
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_109297.1
 
|tss_id=hg_109297.1
 
|tss_score=1
 
|tss_score=1
|uniprot_id=Q68DX3
+
|uniprot_id=
 
}}
 
}}

Latest revision as of 20:54, 19 July 2021

Basic information about the TSS


TSS ID:hg_109297.1
Species:human
Chr:chr10
TSS Classification:yes
Start:48274864
End:48274880
Strand:-
TSS Score:1
Start of the center position in the TSS region:48274872
End of the center position in the TSS region:48274873



Gene and protein annotation


Transcript_name:CR749241
Distance:0
GeneID:143162
HGNC/MGI_ID:HGNC:28572
UniProt_ID:
Gene_name:FERM and PDZ domain containing 2
Gene_symbol:FRMPD2
Gene_synonyms:MGC35285
Gene_source:HGNC:28572



Transcript annotation


Transcript_name:CR749241
Distance:0
Num_trans:143162
All_trans:HGNC:28572



TATA-Box annotation


Distance to TSS:-176
Nearest PromoterID:NM_001018071
Entrez ID:143162
Nearest Unigene:Hs.664786
Nearest Refseq:NM_152428
Nearest Ensembl:ENSG00000170324
Gene Name:FERM and PDZ domain containing 2
Gene Alias:PDZD5C|PDZK4|PDZK5C
Gene Description:FERM and PDZ domain containing 2
Gene Type:protein-coding
CpG%:0.02
GC%:0.567164
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):