Difference between revisions of "TSS:Hg 232403.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 4: | Line 4: | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=12 |
| − | |end= | + | |end=78037240 |
|end_of_center_position=78037233 | |end_of_center_position=78037233 | ||
|entrez_id=509 | |entrez_id=509 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=ATP5C | + | |gene_alias=ATP5C{{!}}ATP5C1{{!}}ATP5CL1 |
| − | |gene_description= | + | |gene_description=ATP synthase F1 subunit gamma |
|gene_id=509 | |gene_id=509 | ||
| − | |gene_name= | + | |gene_name=ATP5F1C |
|gene_source=HGNC:833 | |gene_source=HGNC:833 | ||
|gene_symbol=ATP5C1 | |gene_symbol=ATP5C1 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:833 | |hgnc_mgi_id=HGNC:833 | ||
|nearest_ensembl=ENSG00000165629 | |nearest_ensembl=ENSG00000165629 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001001973 |
|nearest_refseq=NM_005174 | |nearest_refseq=NM_005174 | ||
|nearest_unigene=Hs.271135 | |nearest_unigene=Hs.271135 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
| − | |start= | + | |start=78037225 |
|start_of_center_position=78037232 | |start_of_center_position=78037232 | ||
| − | |strand= | + | |strand=- |
| − | |transcript_name= | + | |transcript_name= |
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_232403.1 | |tss_id=hg_232403.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 08:36, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 78037232 |
|---|---|
| End of the center position in the TSS region: | 78037233 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | BC000470:0 BC013394:0 BC013865:2 ENST00000460820.6:-5 uc057rpf.1:-5 ENST00000465936.5:-10 uc057rpe.1:-10 AK294061:-10 BC010380:-10 BC016812:-11 AK129907:-11 ENST00000335698.4:-12 uc001ijv.4:-12 AK292896:-12 AK296803:-12 D16562:-12 D16563:-12 ENST00000460362.5:-14 uc057rpd.1:-14 CU677727:18 HQ448142:18 KJ890734:18 KJ896474:18 CR457403:19 ENST00000472202.1:21 uc057rpg.1:21 BC020824:-21 ENST00000462760.1:-30 uc057rpc.1:-30 BC000931:-33 BC026049:40 ENST00000493053.5:-42 uc057rpb.1:-42 NM_005174:-59 NM_001001973:-59 ENST00000356708.11:-60 uc001iju.4:-60 |
TATA-Box annotation
| Distance to TSS: | 12 |
|---|---|
| Nearest PromoterID: | NM_001001973 |
| Entrez ID: | 509 |
| Nearest Unigene: | Hs.271135 |
| Nearest Refseq: | NM_005174 |
| Nearest Ensembl: | ENSG00000165629 |
| Gene Name: | ATP5F1C |
| Gene Alias: | ATP5C|ATP5C1|ATP5CL1 |
| Gene Description: | ATP synthase F1 subunit gamma |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
