Difference between revisions of "TSS:Hg 106379.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=NM_001330738:0 NM_001330737:0 NM_001330736:0 NM_001330735:0 NM_001330733:0 LF345592:-137 MA581169:-137 LF345593:163 MA581170:163 ENST00000563195.1:-196 ENST00000539666.5:-212 ENST00000478086.5:-212 ENST00000624776.3:-212 NM_001278525:-212 NM_001330732:-212 AK095317:-212 BC030967:-212 NM_001330734:315 BC109046:-364 BC109045:-369 ENST00000484770.1:372 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=7 | |distance_to_tss=7 | ||
|end=96130307 | |end=96130307 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:29009 | |hgnc_mgi_id=HGNC:29009 | ||
|nearest_ensembl=ENSG00000177853 | |nearest_ensembl=ENSG00000177853 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001330735 |
|nearest_refseq=NM_014803 | |nearest_refseq=NM_014803 | ||
|nearest_unigene=Hs.600823 | |nearest_unigene=Hs.600823 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=96130267 | |start=96130267 | ||
|start_of_center_position=96130287 | |start_of_center_position=96130287 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001330736.1 NM_001330737.1 NM_001330735.1 NM_001330733.1 NM_001330738.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106379.1 | |tss_id=hg_106379.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q6AHZ1 |
}} | }} | ||
Latest revision as of 19:51, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 96130287 |
|---|---|
| End of the center position in the TSS region: | 96130288 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001330736.1 NM_001330737.1 NM_001330735.1 NM_001330733.1 NM_001330738.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | NM_001330738:0 NM_001330737:0 NM_001330736:0 NM_001330735:0 NM_001330733:0 LF345592:-137 MA581169:-137 LF345593:163 MA581170:163 ENST00000563195.1:-196 ENST00000539666.5:-212 ENST00000478086.5:-212 ENST00000624776.3:-212 NM_001278525:-212 NM_001330732:-212 AK095317:-212 BC030967:-212 NM_001330734:315 BC109046:-364 BC109045:-369 ENST00000484770.1:372 |
TATA-Box annotation
| Distance to TSS: | 7 |
|---|---|
| Nearest PromoterID: | NM_001330735 |
| Entrez ID: | 9849 |
| Nearest Unigene: | Hs.600823 |
| Nearest Refseq: | NM_014803 |
| Nearest Ensembl: | ENSG00000177853 |
| Gene Name: | zinc finger protein 518A |
| Gene Alias: | ZNF518 |
| Gene Description: | zinc finger protein 518A |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
