Difference between revisions of "TSS:Hg 106529.1"
From referenceTSS
| Line 3: | Line 3: | ||
|SCD1= | |SCD1= | ||
|SCDOS= | |SCDOS= | ||
| − | |all_trans=AB529038:82 KJ897520:82 BC005807:-84 AK222862:-114 Y13647:-114 AF097514:-142 AB208982:-154 | + | |all_trans=LF345708:55 MA581285:55 AB529038:82 KJ897520:82 BC005807:-84 AK222862:-114 Y13647:-114 AF097514:-142 LF345707:-149 MA581284:-149 AB208982:-154 ENST00000370355.3:-179 NM_005063:-179 AK312312:-179 LF345709:249 MA581286:249 BC062303:-283 AB032261:-288 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| − | |distance= | + | |distance=55 |
| − | |distance_to_tss= | + | |distance_to_tss=184 |
|end=100347423 | |end=100347423 | ||
|end_of_center_position=100347418 | |end_of_center_position=100347418 | ||
|entrez_id=6319 | |entrez_id=6319 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
| − | |gene_alias=FADS5 | + | |gene_alias=FADS5{{!}}MSTP008{{!}}SCD1{{!}}SCDOS{{!}}hSCD1 |
|gene_description=stearoyl-CoA desaturase | |gene_description=stearoyl-CoA desaturase | ||
|gene_id=6319 | |gene_id=6319 | ||
| − | |gene_name= | + | |gene_name=SCD |
|gene_source=HGNC:10571 | |gene_source=HGNC:10571 | ||
|gene_symbol=SCD | |gene_symbol=SCD | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_005063 | |nearest_refseq=NM_005063 | ||
|nearest_unigene=Hs.558396 | |nearest_unigene=Hs.558396 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=human | |species=human | ||
|start=100347411 | |start=100347411 | ||
|start_of_center_position=100347417 | |start_of_center_position=100347417 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF345708 MA581285 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106529.1 | |tss_id=hg_106529.1 | ||
Latest revision as of 18:39, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 100347417 |
|---|---|
| End of the center position in the TSS region: | 100347418 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF345708 MA581285 |
|---|---|
| Distance: | 55 |
| Num_trans: | 18 |
| All_trans: | LF345708:55 MA581285:55 AB529038:82 KJ897520:82 BC005807:-84 AK222862:-114 Y13647:-114 AF097514:-142 LF345707:-149 MA581284:-149 AB208982:-154 ENST00000370355.3:-179 NM_005063:-179 AK312312:-179 LF345709:249 MA581286:249 BC062303:-283 AB032261:-288 |
TATA-Box annotation
| Distance to TSS: | 184 |
|---|---|
| Nearest PromoterID: | NM_005063 |
| Entrez ID: | 6319 |
| Nearest Unigene: | Hs.558396 |
| Nearest Refseq: | NM_005063 |
| Nearest Ensembl: | ENSG00000099194 |
| Gene Name: | SCD |
| Gene Alias: | FADS5|MSTP008|SCD1|SCDOS|hSCD1 |
| Gene Description: | stearoyl-CoA desaturase |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
