Difference between revisions of "TSS:Hg 232058.1"
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{{TSSDetail | {{TSSDetail | ||
|FAM178A= | |FAM178A= | ||
| − | |all_trans= | + | |all_trans=HGNC:17814 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=-114 | |distance=-114 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-280 |
|end=100912683 | |end=100912683 | ||
|end_of_center_position=100912683 | |end_of_center_position=100912683 | ||
|entrez_id=55719 | |entrez_id=55719 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias=C10orf6 | + | |gene_alias=C10orf6{{!}}FAM178A |
|gene_description=SMC5-SMC6 complex localization factor 2 | |gene_description=SMC5-SMC6 complex localization factor 2 | ||
|gene_id=55719 | |gene_id=55719 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:17814 | |hgnc_mgi_id=HGNC:17814 | ||
|nearest_ensembl=ENSG00000119906 | |nearest_ensembl=ENSG00000119906 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001136123 |
|nearest_refseq=NM_018121 | |nearest_refseq=NM_018121 | ||
|nearest_unigene=Hs.447458 | |nearest_unigene=Hs.447458 | ||
| − | |num_trans= | + | |num_trans=55719 |
|species=human | |species=human | ||
|start=100912682 | |start=100912682 | ||
|start_of_center_position=100912682 | |start_of_center_position=100912682 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AF460992 AF460991 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_232058.1 | |tss_id=hg_232058.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Latest revision as of 11:02, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 100912682 |
|---|---|
| End of the center position in the TSS region: | 100912683 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AF460992 AF460991 |
|---|---|
| Distance: | -114 |
| Num_trans: | 55719 |
| All_trans: | HGNC:17814 |
TATA-Box annotation
| Distance to TSS: | -280 |
|---|---|
| Nearest PromoterID: | NM_001136123 |
| Entrez ID: | 55719 |
| Nearest Unigene: | Hs.447458 |
| Nearest Refseq: | NM_018121 |
| Nearest Ensembl: | ENSG00000119906 |
| Gene Name: | SMC5-SMC6 complex localization factor 2 |
| Gene Alias: | C10orf6|FAM178A |
| Gene Description: | SMC5-SMC6 complex localization factor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
