Difference between revisions of "TSS:Mm 99468.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK185467:167 ENSMUST00000177428.1:-465 | + | |all_trans=LF230899:-146 MA466476:-146 AK185467:167 ENSMUST00000177428.1:-465 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=-146 |
| − | |distance_to_tss= | + | |distance_to_tss=5381 |
|end=102435895 | |end=102435895 | ||
|end_of_center_position=102435888 | |end_of_center_position=102435888 | ||
| Line 10: | Line 10: | ||
|epithelin= | |epithelin= | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
| − | |gene_alias=Pgrn | + | |gene_alias=GP88{{!}}PCDGF{{!}}PEPI{{!}}Pgrn{{!}}epithelin |
|gene_description=granulin | |gene_description=granulin | ||
|gene_id=14824 | |gene_id=14824 | ||
| − | |gene_name= | + | |gene_name=Grn |
|gene_source=MGI:95832 | |gene_source=MGI:95832 | ||
|gene_symbol=Grn | |gene_symbol=Grn | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_008175 | |nearest_refseq=NM_008175 | ||
|nearest_unigene=Mm.1568 | |nearest_unigene=Mm.1568 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=mouse | |species=mouse | ||
|start=102435880 | |start=102435880 | ||
|start_of_center_position=102435887 | |start_of_center_position=102435887 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF230899 MA466476 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=mm_99468.1 | |tss_id=mm_99468.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 14:07, 18 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 102435887 |
|---|---|
| End of the center position in the TSS region: | 102435888 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF230899 MA466476 |
|---|---|
| Distance: | -146 |
| Num_trans: | 4 |
| All_trans: | LF230899:-146 MA466476:-146 AK185467:167 ENSMUST00000177428.1:-465 |
TATA-Box annotation
| Distance to TSS: | 5381 |
|---|---|
| Nearest PromoterID: | NM_008175 |
| Entrez ID: | 14824 |
| Nearest Unigene: | Mm.1568 |
| Nearest Refseq: | NM_008175 |
| Nearest Ensembl: | ENSMUSG00000034708 |
| Gene Name: | Grn |
| Gene Alias: | GP88|PCDGF|PEPI|Pgrn|epithelin |
| Gene Description: | granulin |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
