Difference between revisions of "TSS:Hg 111980.1"
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK297577:177 ENST00000488181. | + | |all_trans=NR_146939:0 NM_001350921:0 NM_001350922:0 NM_001350923:0 AK297577:177 ENST00000488181.2:241 AK309217:266 |
|bA422P15.2= | |bA422P15.2= | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss=- | + | |distance_to_tss=-183 |
|end=126670700 | |end=126670700 | ||
|end_of_center_position=126670694 | |end_of_center_position=126670694 | ||
|entrez_id=118611 | |entrez_id=118611 | ||
|gc_percent=0.432836 | |gc_percent=0.432836 | ||
| − | |gene_alias=FATS | + | |gene_alias=FATS{{!}}bA422P15.2 |
|gene_description=chromosome 10 open reading frame 90 | |gene_description=chromosome 10 open reading frame 90 | ||
|gene_id=118611 | |gene_id=118611 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:26563 | |hgnc_mgi_id=HGNC:26563 | ||
|nearest_ensembl=ENSG00000154493 | |nearest_ensembl=ENSG00000154493 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001350922 |
|nearest_refseq=NM_001004298 | |nearest_refseq=NM_001004298 | ||
|nearest_unigene=Hs.587663 | |nearest_unigene=Hs.587663 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=126670686 | |start=126670686 | ||
|start_of_center_position=126670693 | |start_of_center_position=126670693 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001350921.2 NM_001350922.2 NR_146939.2 NM_001350923.2 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_111980.1 | |tss_id=hg_111980.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Latest revision as of 21:53, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 126670693 |
|---|---|
| End of the center position in the TSS region: | 126670694 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001350921.2 NM_001350922.2 NR_146939.2 NM_001350923.2 |
|---|---|
| Distance: | 0 |
| Num_trans: | 7 |
| All_trans: | NR_146939:0 NM_001350921:0 NM_001350922:0 NM_001350923:0 AK297577:177 ENST00000488181.2:241 AK309217:266 |
TATA-Box annotation
| Distance to TSS: | -183 |
|---|---|
| Nearest PromoterID: | NM_001350922 |
| Entrez ID: | 118611 |
| Nearest Unigene: | Hs.587663 |
| Nearest Refseq: | NM_001004298 |
| Nearest Ensembl: | ENSG00000154493 |
| Gene Name: | chromosome 10 open reading frame 90 |
| Gene Alias: | FATS|bA422P15.2 |
| Gene Description: | chromosome 10 open reading frame 90 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.432836 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
