Difference between revisions of "TSS:Hg 112303.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000528694 | + | |all_trans=LF370582:147 MA606159:147 ENST00000528694.1:-189 AK097334:-189 ENST00000527763.5:-191 AK127926:-191 ENST00000530688.5:-199 AK075180:-199 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| − | |distance= | + | |distance=147 |
|distance_to_tss=1238 | |distance_to_tss=1238 | ||
|end=829500 | |end=829500 | ||
| Line 12: | Line 12: | ||
|gene_description=calcium release activated channel regulator 2B | |gene_description=calcium release activated channel regulator 2B | ||
|gene_id=283229 | |gene_id=283229 | ||
| − | |gene_name= | + | |gene_name=CRACR2B |
|gene_source=HGNC:28703 | |gene_source=HGNC:28703 | ||
|gene_symbol=CRACR2B | |gene_symbol=CRACR2B | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:28703 | |hgnc_mgi_id=HGNC:28703 | ||
|nearest_ensembl=ENSG00000177685 | |nearest_ensembl=ENSG00000177685 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_173584 |
|nearest_refseq=NM_173584 | |nearest_refseq=NM_173584 | ||
|nearest_unigene=Hs.660936 | |nearest_unigene=Hs.660936 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=829495 | |start=829495 | ||
|start_of_center_position=829497 | |start_of_center_position=829497 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF370582 MA606159 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_112303.1 | |tss_id=hg_112303.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 21:45, 12 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 829497 |
|---|---|
| End of the center position in the TSS region: | 829498 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | LF370582 MA606159 |
|---|---|
| Distance: | 147 |
| Num_trans: | 8 |
| All_trans: | LF370582:147 MA606159:147 ENST00000528694.1:-189 AK097334:-189 ENST00000527763.5:-191 AK127926:-191 ENST00000530688.5:-199 AK075180:-199 |
TATA-Box annotation
| Distance to TSS: | 1238 |
|---|---|
| Nearest PromoterID: | NM_173584 |
| Entrez ID: | 283229 |
| Nearest Unigene: | Hs.660936 |
| Nearest Refseq: | NM_173584 |
| Nearest Ensembl: | ENSG00000177685 |
| Gene Name: | CRACR2B |
| Gene Alias: | EFCAB4A |
| Gene Description: | calcium release activated channel regulator 2B |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
