Difference between revisions of "TSS:Hg 233208.1"
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:16276 |
| − | |chr= | + | |chr=chr11 |
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| − | |distance=- | + | |distance=-84 |
|distance_to_tss=35 | |distance_to_tss=35 | ||
| − | |end= | + | |end=5680093 |
|end_of_center_position=5680093 | |end_of_center_position=5680093 | ||
|entrez_id=100129405 | |entrez_id=100129405 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
|gene_alias=MSTO2 | |gene_alias=MSTO2 | ||
| − | |gene_description= | + | |gene_description=misato family member 2, pseudogene |
| − | |gene_id= | + | |gene_id=85363 |
| − | |gene_name= | + | |gene_name=tripartite motif containing 5 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:16276 |
| − | |gene_symbol= | + | |gene_symbol=TRIM5 |
| − | |gene_synonyms= | + | |gene_synonyms=RNF88 TRIM5alpha |
|gene_type=pseudo | |gene_type=pseudo | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:16276 |
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_024117 | |nearest_promoter_id=NR_024117 | ||
|nearest_refseq=NR_024117 | |nearest_refseq=NR_024117 | ||
|nearest_unigene=Hs.656361 | |nearest_unigene=Hs.656361 | ||
| − | |num_trans= | + | |num_trans=85363 |
|species=human | |species=human | ||
| − | |start= | + | |start=5680092 |
|start_of_center_position=5680092 | |start_of_center_position=5680092 | ||
| − | |strand= | + | |strand=- |
| − | |transcript_name= | + | |transcript_name=AB362928 AY625000 DQ288685 HQ447250 KR710559 KR710560 CU676898 |
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_233208.1 | |tss_id=hg_233208.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=B1Q3L0 |
}} | }} | ||
Latest revision as of 11:27, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 5680092 |
|---|---|
| End of the center position in the TSS region: | 5680093 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB362928 AY625000 DQ288685 HQ447250 KR710559 KR710560 CU676898 |
|---|---|
| Distance: | -84 |
| Num_trans: | 85363 |
| All_trans: | HGNC:16276 |
TATA-Box annotation
| Distance to TSS: | 35 |
|---|---|
| Nearest PromoterID: | NR_024117 |
| Entrez ID: | 100129405 |
| Nearest Unigene: | Hs.656361 |
| Nearest Refseq: | NR_024117 |
| Nearest Ensembl: | |
| Gene Name: | tripartite motif containing 5 |
| Gene Alias: | MSTO2 |
| Gene Description: | misato family member 2, pseudogene |
| Gene Type: | pseudo |
| CpG%: | 0.11 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
