Difference between revisions of "TSS:Hg 238263.1"
From referenceTSS
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|CTCF-T= | |CTCF-T= | ||
|HMGB1L1= | |HMGB1L1= | ||
| − | |all_trans= | + | |all_trans=HGNC:620 |
| − | |chr= | + | |chr=chr21 |
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
|dJ579F20.2= | |dJ579F20.2= | ||
| − | |distance=- | + | |distance=-4 |
|distance_to_tss=33 | |distance_to_tss=33 | ||
| − | |end= | + | |end=26170734 |
|end_of_center_position=26170734 | |end_of_center_position=26170734 | ||
|entrez_id=140690 | |entrez_id=140690 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
| − | |gene_alias=BORIS | + | |gene_alias=BORIS{{!}}CT27{{!}}CTCF-T{{!}}HMGB1L1{{!}}dJ579F20.2 |
|gene_description=CCCTC-binding factor like | |gene_description=CCCTC-binding factor like | ||
| − | |gene_id= | + | |gene_id=351 |
| − | |gene_name= | + | |gene_name=amyloid beta precursor protein |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:620 |
| − | |gene_symbol= | + | |gene_symbol=APP |
| − | |gene_synonyms= | + | |gene_synonyms=alpha-sAPP |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:620 |
|nearest_ensembl=ENSG00000124092 | |nearest_ensembl=ENSG00000124092 | ||
|nearest_promoter_id=NM_001269041 | |nearest_promoter_id=NM_001269041 | ||
|nearest_refseq=NM_080618 | |nearest_refseq=NM_080618 | ||
|nearest_unigene=Hs.131543 | |nearest_unigene=Hs.131543 | ||
| − | |num_trans= | + | |num_trans=351 |
|species=human | |species=human | ||
| − | |start= | + | |start=26170732 |
|start_of_center_position=26170733 | |start_of_center_position=26170733 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=X06989 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_238263.1 | |tss_id=hg_238263.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Latest revision as of 13:18, 21 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 26170733 |
|---|---|
| End of the center position in the TSS region: | 26170734 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | X06989 |
|---|---|
| Distance: | -4 |
| Num_trans: | 351 |
| All_trans: | HGNC:620 |
TATA-Box annotation
| Distance to TSS: | 33 |
|---|---|
| Nearest PromoterID: | NM_001269041 |
| Entrez ID: | 140690 |
| Nearest Unigene: | Hs.131543 |
| Nearest Refseq: | NM_080618 |
| Nearest Ensembl: | ENSG00000124092 |
| Gene Name: | amyloid beta precursor protein |
| Gene Alias: | BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 |
| Gene Description: | CCCTC-binding factor like |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
