Difference between revisions of "TSS:Hg 114455.1"
From referenceTSS
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| Line 5: | Line 5: | ||
|MS4A4= | |MS4A4= | ||
|MS4A7= | |MS4A7= | ||
| − | |all_trans= | + | |all_trans=HGNC:13371 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance=49 | |distance=49 | ||
| − | |distance_to_tss= | + | |distance_to_tss=1893 |
|end=60282564 | |end=60282564 | ||
|end_of_center_position=60282559 | |end_of_center_position=60282559 | ||
|entrez_id=51338 | |entrez_id=51338 | ||
|gc_percent=0.422886 | |gc_percent=0.422886 | ||
| − | |gene_alias=4SPAN1 | + | |gene_alias=4SPAN1{{!}}CD20-L1{{!}}CD20L1{{!}}HDCME31P{{!}}MS4A4{{!}}MS4A7 |
|gene_description=membrane spanning 4-domains A4A | |gene_description=membrane spanning 4-domains A4A | ||
|gene_id=51338 | |gene_id=51338 | ||
| Line 24: | Line 24: | ||
|hgnc_mgi_id=HGNC:13371 | |hgnc_mgi_id=HGNC:13371 | ||
|nearest_ensembl=ENSG00000110079 | |nearest_ensembl=ENSG00000110079 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_024021 |
|nearest_refseq=NM_024021 | |nearest_refseq=NM_024021 | ||
|nearest_unigene=Hs.325960 | |nearest_unigene=Hs.325960 | ||
| − | |num_trans= | + | |num_trans=51338 |
|species=human | |species=human | ||
|start=60282553 | |start=60282553 | ||
|start_of_center_position=60282558 | |start_of_center_position=60282558 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-33(GACTATAAAATG,-,0.00) |
| − | |transcript_name=AF350500 AF237912 | + | |transcript_name=AF350500 AF237912 GQ891540 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_114455.1 | |tss_id=hg_114455.1 | ||
Latest revision as of 22:46, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 60282558 |
|---|---|
| End of the center position in the TSS region: | 60282559 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AF350500 AF237912 GQ891540 |
|---|---|
| Distance: | 49 |
| Num_trans: | 51338 |
| All_trans: | HGNC:13371 |
TATA-Box annotation
| Distance to TSS: | 1893 |
|---|---|
| Nearest PromoterID: | NM_024021 |
| Entrez ID: | 51338 |
| Nearest Unigene: | Hs.325960 |
| Nearest Refseq: | NM_024021 |
| Nearest Ensembl: | ENSG00000110079 |
| Gene Name: | membrane spanning 4-domains A4A |
| Gene Alias: | 4SPAN1|CD20-L1|CD20L1|HDCME31P|MS4A4|MS4A7 |
| Gene Description: | membrane spanning 4-domains A4A |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.422886 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(GACTATAAAATG,-,0.00) |
