Difference between revisions of "TSS:Hg 154452.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000568999.5:479 uc059vas.1:479 |chr=chr16 |cpg_percent=0.01 |distance=479 |distance_to_tss=-1283 |end=58462367 |entrez_id=65009 |gc_percent=0.5074...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |SMAP-8= |
| + | |SMAP8= | ||
| + | |all_trans=HGNC:14466 | ||
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=-1283 | |distance_to_tss=-1283 | ||
|end=58462367 | |end=58462367 | ||
| + | |end_of_center_position=58462362 | ||
|entrez_id=65009 | |entrez_id=65009 | ||
|gc_percent=0.507463 | |gc_percent=0.507463 | ||
| − | |gene_alias=BDM1 | + | |gene_alias=BDM1{{!}}SMAP-8{{!}}SMAP8 |
|gene_description=NDRG family member 4 | |gene_description=NDRG family member 4 | ||
|gene_id=65009 | |gene_id=65009 | ||
| Line 21: | Line 24: | ||
|nearest_refseq=NM_020465 | |nearest_refseq=NM_020465 | ||
|nearest_unigene=Hs.322430 | |nearest_unigene=Hs.322430 | ||
| − | |num_trans= | + | |num_trans=65009 |
|species=human | |species=human | ||
|start=58462356 | |start=58462356 | ||
| + | |start_of_center_position=58462361 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000568999.5 | + | |transcript_name=ENST00000568999.5 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_154452.1 | |tss_id=hg_154452.1 | ||
Latest revision as of 13:17, 20 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 58462361 |
|---|---|
| End of the center position in the TSS region: | 58462362 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000568999.5 |
|---|---|
| Distance: | 479 |
| Num_trans: | 65009 |
| All_trans: | HGNC:14466 |
TATA-Box annotation
| Distance to TSS: | -1283 |
|---|---|
| Nearest PromoterID: | NM_020465 |
| Entrez ID: | 65009 |
| Nearest Unigene: | Hs.322430 |
| Nearest Refseq: | NM_020465 |
| Nearest Ensembl: | ENSG00000103034 |
| Gene Name: | NDRG family member 4 |
| Gene Alias: | BDM1|SMAP-8|SMAP8 |
| Gene Description: | NDRG family member 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.507463 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
