Difference between revisions of "TSS:Hg 234421.1"
From referenceTSS
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| Line 6: | Line 6: | ||
|KRT1A= | |KRT1A= | ||
|NEPPK= | |NEPPK= | ||
| + | |all_trans=HGNC:5031 | ||
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=2201 | |distance_to_tss=2201 | ||
| − | |end= | + | |end=54280753 |
|end_of_center_position=54280749 | |end_of_center_position=54280749 | ||
|entrez_id=3848 | |entrez_id=3848 | ||
|gc_percent=0.412935 | |gc_percent=0.412935 | ||
| − | |gene_alias=CK1 | + | |gene_alias=CK1{{!}}EHK{{!}}EHK1{{!}}EPPK{{!}}K1{{!}}KRT1A{{!}}NEPPK |
|gene_description=keratin 1 | |gene_description=keratin 1 | ||
| − | |gene_name= | + | |gene_id=3178 |
| + | |gene_name=heterogeneous nuclear ribonucleoprotein A1 | ||
| + | |gene_source=HGNC:5031 | ||
| + | |gene_symbol=HNRNPA1 | ||
| + | |gene_synonyms=ALS20 hnRNP-A1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:5031 | ||
|nearest_ensembl=ENSG00000167768 | |nearest_ensembl=ENSG00000167768 | ||
|nearest_promoter_id=NM_006121 | |nearest_promoter_id=NM_006121 | ||
|nearest_refseq=NM_006121 | |nearest_refseq=NM_006121 | ||
|nearest_unigene=Hs.80828 | |nearest_unigene=Hs.80828 | ||
| − | |num_trans= | + | |num_trans=3178 |
|species=human | |species=human | ||
| − | |start= | + | |start=54280743 |
|start_of_center_position=54280748 | |start_of_center_position=54280748 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000547708.5 ENST00000547566.5 ENST00000679228.1 AK298176 BC009600 GQ900890 AK303303 AK308679 AK129814 X06747 BC070315 AK291113 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_234421.1 | |tss_id=hg_234421.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=A0A024RB53 B4DP35 B4E0B5 F8W646 | ||
}} | }} | ||
Latest revision as of 11:53, 21 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 54280748 |
|---|---|
| End of the center position in the TSS region: | 54280749 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000547708.5 ENST00000547566.5 ENST00000679228.1 AK298176 BC009600 GQ900890 AK303303 AK308679 AK129814 X06747 BC070315 AK291113 |
|---|---|
| Distance: | 0 |
| Num_trans: | 3178 |
| All_trans: | HGNC:5031 |
TATA-Box annotation
| Distance to TSS: | 2201 |
|---|---|
| Nearest PromoterID: | NM_006121 |
| Entrez ID: | 3848 |
| Nearest Unigene: | Hs.80828 |
| Nearest Refseq: | NM_006121 |
| Nearest Ensembl: | ENSG00000167768 |
| Gene Name: | heterogeneous nuclear ribonucleoprotein A1 |
| Gene Alias: | CK1|EHK|EHK1|EPPK|K1|KRT1A|NEPPK |
| Gene Description: | keratin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.412935 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
