Difference between revisions of "TSS:Hg 220791.1"
From referenceTSS
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| Line 5: | Line 5: | ||
|IBMPFD3= | |IBMPFD3= | ||
|UP 1= | |UP 1= | ||
| − | |all_trans= | + | |all_trans=HGNC:5031 |
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=-148 |
| − | |distance_to_tss= | + | |distance_to_tss=1217 |
|end=54281943 | |end=54281943 | ||
|end_of_center_position=54281943 | |end_of_center_position=54281943 | ||
|entrez_id=3178 | |entrez_id=3178 | ||
|gc_percent=0.412935 | |gc_percent=0.412935 | ||
| − | |gene_alias=ALS19 | + | |gene_alias=ALS19{{!}}ALS20{{!}}HNRPA1{{!}}HNRPA1L3{{!}}IBMPFD3{{!}}UP 1{{!}}hnRNP A1{{!}}hnRNP-A1 |
|gene_description=heterogeneous nuclear ribonucleoprotein A1 | |gene_description=heterogeneous nuclear ribonucleoprotein A1 | ||
|gene_id=3178 | |gene_id=3178 | ||
| Line 20: | Line 20: | ||
|gene_source=HGNC:5031 | |gene_source=HGNC:5031 | ||
|gene_symbol=HNRNPA1 | |gene_symbol=HNRNPA1 | ||
| − | |gene_synonyms=ALS20 hnRNP-A1 | + | |gene_synonyms=ALS20 hnRNP-A1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:5031 | |hgnc_mgi_id=HGNC:5031 | ||
| Line 29: | Line 29: | ||
|nearest_refseq=NM_002136 | |nearest_refseq=NM_002136 | ||
|nearest_unigene=Hs.546261 | |nearest_unigene=Hs.546261 | ||
| − | |num_trans= | + | |num_trans=3178 |
|species=human | |species=human | ||
|start=54281942 | |start=54281942 | ||
|start_of_center_position=54281942 | |start_of_center_position=54281942 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000676842.1 ENST00000550994.2 ENST00000679273.1 ENST00000678448.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_220791.1 | |tss_id=hg_220791.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=F8VYN5 |
}} | }} | ||
Latest revision as of 07:33, 21 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 54281942 |
|---|---|
| End of the center position in the TSS region: | 54281943 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000676842.1 ENST00000550994.2 ENST00000679273.1 ENST00000678448.1 |
|---|---|
| Distance: | -148 |
| Num_trans: | 3178 |
| All_trans: | HGNC:5031 |
TATA-Box annotation
| Distance to TSS: | 1217 |
|---|---|
| Nearest PromoterID: | NM_002136 |
| Entrez ID: | 3178 |
| Nearest Unigene: | Hs.546261 |
| Nearest Refseq: | NM_002136 |
| Nearest Ensembl: | ENSG00000135486 |
| Gene Name: | heterogeneous nuclear ribonucleoprotein A1 |
| Gene Alias: | ALS19|ALS20|HNRPA1|HNRPA1L3|IBMPFD3|UP 1|hnRNP A1|hnRNP-A1 |
| Gene Description: | heterogeneous nuclear ribonucleoprotein A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.412935 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
