Difference between revisions of "TSS:Hg 52012.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000506961.5 | + | |all_trans=NM_001114175:32 NM_001330690:32 NM_001377147:32 NM_001377153:32 NM_001377150:32 NM_001377149:32 NM_001377148:32 ENST00000506961.5:59 ENST00000514090.5:60 ENST00000356504.5:62 AK125179:62 ENST00000503806.5:78 ENST00000507460.1:-103 AK307128:-103 AB209295:-308 ENST00000630416.2:-341 ENST00000514193.5:-341 AK293466:-341 AK289662:404 NM_001377151:406 S62907:-481 |
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| − | |distance= | + | |distance=32 |
|distance_to_tss=-65 | |distance_to_tss=-65 | ||
|end=46389447 | |end=46389447 | ||
| Line 12: | Line 12: | ||
|gene_description=gamma-aminobutyric acid type A receptor alpha2 subunit | |gene_description=gamma-aminobutyric acid type A receptor alpha2 subunit | ||
|gene_id=2555 | |gene_id=2555 | ||
| − | |gene_name=gamma-aminobutyric acid type A receptor alpha2 | + | |gene_name=gamma-aminobutyric acid type A receptor subunit alpha2 |
|gene_source=HGNC:4076 | |gene_source=HGNC:4076 | ||
|gene_symbol=GABRA2 | |gene_symbol=GABRA2 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_000807 | |nearest_refseq=NM_000807 | ||
|nearest_unigene=Hs.48372 | |nearest_unigene=Hs.48372 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=46389440 | |start=46389440 | ||
|start_of_center_position=46389443 | |start_of_center_position=46389443 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-52(TCTTTTATAGTC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=NM_001114175.3 NM_001377149.1 NM_001377153.1 NM_001377148.1 NM_001330690.2 NM_001377147.1 NM_001377150.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_52012.1 | |tss_id=hg_52012.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=P47869 |
}} | }} | ||
Latest revision as of 01:22, 22 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 46389443 |
|---|---|
| End of the center position in the TSS region: | 46389444 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001114175.3 NM_001377149.1 NM_001377153.1 NM_001377148.1 NM_001330690.2 NM_001377147.1 NM_001377150.1 |
|---|---|
| Distance: | 32 |
| Num_trans: | 21 |
| All_trans: | NM_001114175:32 NM_001330690:32 NM_001377147:32 NM_001377153:32 NM_001377150:32 NM_001377149:32 NM_001377148:32 ENST00000506961.5:59 ENST00000514090.5:60 ENST00000356504.5:62 AK125179:62 ENST00000503806.5:78 ENST00000507460.1:-103 AK307128:-103 AB209295:-308 ENST00000630416.2:-341 ENST00000514193.5:-341 AK293466:-341 AK289662:404 NM_001377151:406 S62907:-481 |
TATA-Box annotation
| Distance to TSS: | -65 |
|---|---|
| Nearest PromoterID: | NM_001114175 |
| Entrez ID: | 2555 |
| Nearest Unigene: | Hs.48372 |
| Nearest Refseq: | NM_000807 |
| Nearest Ensembl: | ENSG00000151834 |
| Gene Name: | gamma-aminobutyric acid type A receptor subunit alpha2 |
| Gene Alias: | - |
| Gene Description: | gamma-aminobutyric acid type A receptor alpha2 subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -52(TCTTTTATAGTC,+,0.00) |
