Difference between revisions of "TSS:Hg 240854.1"
From referenceTSS
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|HIN1= | |HIN1= | ||
|HSHIN1= | |HSHIN1= | ||
| + | |all_trans=HGNC:34343 | ||
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=21 |
| − | |distance_to_tss=- | + | |distance_to_tss=-72207 |
| − | |end= | + | |end=76214019 |
|end_of_center_position=76214019 | |end_of_center_position=76214019 | ||
|entrez_id=54726 | |entrez_id=54726 | ||
|gc_percent=0.432836 | |gc_percent=0.432836 | ||
| − | |gene_alias=DUBA6 | + | |gene_alias=DUBA6{{!}}HIN1{{!}}HSHIN1 |
|gene_description=OTU deubiquitinase 4 | |gene_description=OTU deubiquitinase 4 | ||
| − | |gene_name= | + | |gene_id=100129583 |
| + | |gene_name=family with sequence similarity 47 member E | ||
| + | |gene_source=HGNC:34343 | ||
| + | |gene_symbol=FAM47E | ||
| + | |gene_synonyms=FLJ42946 LOC100129583 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:34343 | ||
|nearest_ensembl=ENSG00000164164 | |nearest_ensembl=ENSG00000164164 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001366058 |
|nearest_refseq=NM_017493 | |nearest_refseq=NM_017493 | ||
|nearest_unigene=Hs.270851 | |nearest_unigene=Hs.270851 | ||
| − | |num_trans= | + | |num_trans=100129583 |
|species=human | |species=human | ||
| − | |start= | + | |start=76214018 |
|start_of_center_position=76214018 | |start_of_center_position=76214018 | ||
| − | |strand= | + | |strand=+ |
| − | |transcript_name= | + | |transcript_name=ENST00000510197.5 AK124936 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_240854.1 | |tss_id=hg_240854.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=Q6ZV65 | ||
}} | }} | ||
Latest revision as of 14:13, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 76214018 |
|---|---|
| End of the center position in the TSS region: | 76214019 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000510197.5 AK124936 |
|---|---|
| Distance: | 21 |
| Num_trans: | 100129583 |
| All_trans: | HGNC:34343 |
TATA-Box annotation
| Distance to TSS: | -72207 |
|---|---|
| Nearest PromoterID: | NM_001366058 |
| Entrez ID: | 54726 |
| Nearest Unigene: | Hs.270851 |
| Nearest Refseq: | NM_017493 |
| Nearest Ensembl: | ENSG00000164164 |
| Gene Name: | family with sequence similarity 47 member E |
| Gene Alias: | DUBA6|HIN1|HSHIN1 |
| Gene Description: | OTU deubiquitinase 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.432836 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
