Difference between revisions of "TSS:Hg 234877.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=LT999886:248 LT999898:248 |
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| − | |distance= | + | |distance=248 |
|distance_to_tss=-242 | |distance_to_tss=-242 | ||
| − | |end= | + | |end=51170214 |
|end_of_center_position=51170212 | |end_of_center_position=51170212 | ||
|entrez_id=8900 | |entrez_id=8900 | ||
| Line 12: | Line 12: | ||
|gene_description=cyclin A1 | |gene_description=cyclin A1 | ||
|gene_id=8900 | |gene_id=8900 | ||
| − | |gene_name= | + | |gene_name=CCNA1 |
|gene_source=HGNC:1577 | |gene_source=HGNC:1577 | ||
|gene_symbol=CCNA1 | |gene_symbol=CCNA1 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:1577 | |hgnc_mgi_id=HGNC:1577 | ||
|nearest_ensembl=ENSG00000133101 | |nearest_ensembl=ENSG00000133101 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001111046 |
|nearest_refseq=NM_003914 | |nearest_refseq=NM_003914 | ||
|nearest_unigene=Hs.417050 | |nearest_unigene=Hs.417050 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
| − | |start= | + | |start=51170209 |
|start_of_center_position=51170211 | |start_of_center_position=51170211 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LT999886 LT999898 |
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_234877.1 | |tss_id=hg_234877.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=P78396 | |uniprot_id=P78396 | ||
}} | }} | ||
Latest revision as of 09:33, 14 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 51170211 |
|---|---|
| End of the center position in the TSS region: | 51170212 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LT999886 LT999898 |
|---|---|
| Distance: | 248 |
| Num_trans: | 2 |
| All_trans: | LT999886:248 LT999898:248 |
TATA-Box annotation
| Distance to TSS: | -242 |
|---|---|
| Nearest PromoterID: | NM_001111046 |
| Entrez ID: | 8900 |
| Nearest Unigene: | Hs.417050 |
| Nearest Refseq: | NM_003914 |
| Nearest Ensembl: | ENSG00000133101 |
| Gene Name: | CCNA1 |
| Gene Alias: | CT146 |
| Gene Description: | cyclin A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
