Difference between revisions of "TSS:Hg 138419.1"
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{{TSSDetail | {{TSSDetail | ||
|RPPH1-1= | |RPPH1-1= | ||
| − | |all_trans= | + | |all_trans=LF334325:15 MA569902:15 LF210043:-37 MA445620:-37 LF334326:207 MA569903:207 LF384983:451 MA620560:451 ENST00000250416.9:452 ENST00000529465.6:465 ENST00000429687.8:472 NM_005484:472 NM_001042618:472 AK300971:472 AK290079:472 ENST00000527915.5:474 AK001980:474 BC172288:477 AJ236912:477 AF085734:482 |
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| − | |distance= | + | |distance=15 |
|distance_to_tss=275 | |distance_to_tss=275 | ||
|end=20343163 | |end=20343163 | ||
| Line 10: | Line 10: | ||
|entrez_id=85495 | |entrez_id=85495 | ||
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
| − | |gene_alias=H1RNA | + | |gene_alias=H1RNA{{!}}RPPH1-1 |
|gene_description=ribonuclease P RNA component H1 | |gene_description=ribonuclease P RNA component H1 | ||
|gene_id=10038 | |gene_id=10038 | ||
| − | |gene_name= | + | |gene_name=RPPH1 |
|gene_source=HGNC:272 | |gene_source=HGNC:272 | ||
|gene_symbol=PARP2 | |gene_symbol=PARP2 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NR_002312 | |nearest_refseq=NR_002312 | ||
|nearest_unigene=Hs.613102 | |nearest_unigene=Hs.613102 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=20343108 | |start=20343108 | ||
|start_of_center_position=20343135 | |start_of_center_position=20343135 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF334325 MA569902 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_138419.1 | |tss_id=hg_138419.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q9UGN5 | |uniprot_id=Q9UGN5 | ||
}} | }} | ||
Latest revision as of 06:37, 13 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 20343135 |
|---|---|
| End of the center position in the TSS region: | 20343136 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF334325 MA569902 |
|---|---|
| Distance: | 15 |
| Num_trans: | 20 |
| All_trans: | LF334325:15 MA569902:15 LF210043:-37 MA445620:-37 LF334326:207 MA569903:207 LF384983:451 MA620560:451 ENST00000250416.9:452 ENST00000529465.6:465 ENST00000429687.8:472 NM_005484:472 NM_001042618:472 AK300971:472 AK290079:472 ENST00000527915.5:474 AK001980:474 BC172288:477 AJ236912:477 AF085734:482 |
TATA-Box annotation
| Distance to TSS: | 275 |
|---|---|
| Nearest PromoterID: | NR_002312 |
| Entrez ID: | 85495 |
| Nearest Unigene: | Hs.613102 |
| Nearest Refseq: | NR_002312 |
| Nearest Ensembl: | ENSG00000277209 |
| Gene Name: | RPPH1 |
| Gene Alias: | H1RNA|RPPH1-1 |
| Gene Description: | ribonuclease P RNA component H1 |
| Gene Type: | ncRNA |
| CpG%: | 0.055 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
