Difference between revisions of "TSS:Hg 163687.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK126882:-11 ENST00000544583.6:-63 NM_001159746:-63 uc002fse.5:-63 AK124547:-63 |chr=chr17 |cpg_percent=0.045 |distance=-11 |distance_to_tss=71 |end=118...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:81 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
|distance=-11 | |distance=-11 | ||
| − | |distance_to_tss= | + | |distance_to_tss=21 |
|end=1187259 | |end=1187259 | ||
| + | |end_of_center_position=1187251 | ||
|entrez_id=29 | |entrez_id=29 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
|gene_alias=MDB | |gene_alias=MDB | ||
| − | |gene_description= | + | |gene_description=ABR activator of RhoGEF and GTPase |
|gene_id=29 | |gene_id=29 | ||
| − | |gene_name= | + | |gene_name=ABR activator of RhoGEF and GTPase |
|gene_source=HGNC:81 | |gene_source=HGNC:81 | ||
|gene_symbol=ABR | |gene_symbol=ABR | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_001092 | |nearest_refseq=NM_001092 | ||
|nearest_unigene=Hs.159306 | |nearest_unigene=Hs.159306 | ||
| − | |num_trans= | + | |num_trans=29 |
|species=human | |species=human | ||
|start=1187242 | |start=1187242 | ||
| + | |start_of_center_position=1187250 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-37(GTCCTTAAAGAG,-,0.00),-35(CCTTAAAGAGAC,+,0.00) |
|transcript_name=AK126882 | |transcript_name=AK126882 | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 16:39, 20 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 1187250 |
|---|---|
| End of the center position in the TSS region: | 1187251 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK126882 |
|---|---|
| Distance: | -11 |
| Num_trans: | 29 |
| All_trans: | HGNC:81 |
TATA-Box annotation
| Distance to TSS: | 21 |
|---|---|
| Nearest PromoterID: | NM_001159746 |
| Entrez ID: | 29 |
| Nearest Unigene: | Hs.159306 |
| Nearest Refseq: | NM_001092 |
| Nearest Ensembl: | ENSG00000159842 |
| Gene Name: | ABR activator of RhoGEF and GTPase |
| Gene Alias: | MDB |
| Gene Description: | ABR activator of RhoGEF and GTPase |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -37(GTCCTTAAAGAG,-,0.00),-35(CCTTAAAGAGAC,+,0.00) |
