Difference between revisions of "TSS:Hg 165186.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000394821.2:0 uc060dmq.1:0 AK313166:0 AK308014:0 ENST00000261707.7:-269 NM_001045:-269 uc002hey.6:-269 ENST00000401766.6:-303 uc060dmn.1:-303 |chr...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |5-HTTLPR= |
| + | |5HTT= | ||
| + | |HTT= | ||
| + | |OCD1= | ||
| + | |SERT= | ||
| + | |SERT1= | ||
| + | |all_trans=HGNC:11050 | ||
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-1 |
|end=30235699 | |end=30235699 | ||
| + | |end_of_center_position=30235698 | ||
|entrez_id=6532 | |entrez_id=6532 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
| − | |gene_alias=5-HTT | + | |gene_alias=5-HTT{{!}}5-HTTLPR{{!}}5HTT{{!}}HTT{{!}}OCD1{{!}}SERT{{!}}SERT1{{!}}hSERT |
|gene_description=solute carrier family 6 member 4 | |gene_description=solute carrier family 6 member 4 | ||
|gene_id=6532 | |gene_id=6532 | ||
| Line 16: | Line 23: | ||
|gene_synonyms=5-HTT SERT1 | |gene_synonyms=5-HTT SERT1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hSERT= | ||
|hgnc_mgi_id=HGNC:11050 | |hgnc_mgi_id=HGNC:11050 | ||
|nearest_ensembl=ENSG00000108576 | |nearest_ensembl=ENSG00000108576 | ||
| Line 21: | Line 29: | ||
|nearest_refseq=NM_001045 | |nearest_refseq=NM_001045 | ||
|nearest_unigene=Hs.29792 | |nearest_unigene=Hs.29792 | ||
| − | |num_trans= | + | |num_trans=6532 |
|species=human | |species=human | ||
|start=30235696 | |start=30235696 | ||
| + | |start_of_center_position=30235697 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000394821.2 | + | |transcript_name=ENST00000650711.1 ENST00000394821.2 AK313166 AK308014 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_165186.1 | |tss_id=hg_165186.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B2R7Y7 J3KPR9 | + | |uniprot_id=B2R7Y7 J3KPR9 P31645 |
}} | }} | ||
Latest revision as of 17:13, 20 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 30235697 |
|---|---|
| End of the center position in the TSS region: | 30235698 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000650711.1 ENST00000394821.2 AK313166 AK308014 |
|---|---|
| Distance: | 0 |
| Num_trans: | 6532 |
| All_trans: | HGNC:11050 |
TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_001045 |
| Entrez ID: | 6532 |
| Nearest Unigene: | Hs.29792 |
| Nearest Refseq: | NM_001045 |
| Nearest Ensembl: | ENSG00000108576 |
| Gene Name: | solute carrier family 6 member 4 |
| Gene Alias: | 5-HTT|5-HTTLPR|5HTT|HTT|OCD1|SERT|SERT1|hSERT |
| Gene Description: | solute carrier family 6 member 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
