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Difference between revisions of "TSS:Hg 141888.1"

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{{TSSDetail
 
{{TSSDetail
 
|PACS1L=
 
|PACS1L=
|all_trans=ENST00000547217.5:0 ENST00000548265.1:0 uc059fzw.1:0 uc059fzx.1:0 BC065220:0 BC050351:0 ENST00000447393.5:-22 uc001yqu.4:-22 AB011174:-22 AB385359:22 ENST00000325438.12:-351 NM_015197:-351 NM_001100913:-351 uc001yqt.4:-351 AY320284:-351
+
|all_trans=HGNC:23794
 
|chr=chr14
 
|chr=chr14
 
|cpg_percent=0.21
 
|cpg_percent=0.21
 
|distance=0
 
|distance=0
|distance_to_tss=414
+
|distance_to_tss=81
 
|end=105314893
 
|end=105314893
 
|end_of_center_position=105314830
 
|end_of_center_position=105314830
 
|entrez_id=23241
 
|entrez_id=23241
 
|gc_percent=0.885572
 
|gc_percent=0.885572
|gene_alias=PACS-2
+
|gene_alias=EIEE66{{!}}PACS-2{{!}}PACS1L
 
|gene_description=phosphofurin acidic cluster sorting protein 2
 
|gene_description=phosphofurin acidic cluster sorting protein 2
 
|gene_id=23241
 
|gene_id=23241
Line 20: Line 20:
 
|hgnc_mgi_id=HGNC:23794
 
|hgnc_mgi_id=HGNC:23794
 
|nearest_ensembl=ENSG00000179364
 
|nearest_ensembl=ENSG00000179364
|nearest_promoter_id=NM_001100913
+
|nearest_promoter_id=NM_015197
 
|nearest_refseq=NM_015197
 
|nearest_refseq=NM_015197
 
|nearest_unigene=Hs.525626
 
|nearest_unigene=Hs.525626
|num_trans=15
+
|num_trans=23241
 
|species=human
 
|species=human
 
|start=105314765
 
|start=105314765
 
|start_of_center_position=105314829
 
|start_of_center_position=105314829
 
|strand=+
 
|strand=+
|transcript_name=ENST00000547217.5 ENST00000548265.1 uc059fzw.1 uc059fzx.1 BC065220 BC050351
+
|transcript_name=ENST00000547217.5 ENST00000548265.1 BC065220 BC050351
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_141888.1
 
|tss_id=hg_141888.1

Latest revision as of 08:44, 20 July 2021

Basic information about the TSS


TSS ID:hg_141888.1
Species:human
Chr:chr14
TSS Classification:yes
Start:105314765
End:105314893
Strand:+
TSS Score:1
Start of the center position in the TSS region:105314829
End of the center position in the TSS region:105314830



Gene and protein annotation


Transcript_name:ENST00000547217.5 ENST00000548265.1 BC065220 BC050351
Distance:0
GeneID:23241
HGNC/MGI_ID:HGNC:23794
UniProt_ID:F8VW41
Gene_name:phosphofurin acidic cluster sorting protein 2
Gene_symbol:PACS2
Gene_synonyms:KIAA0602
Gene_source:HGNC:23794



Transcript annotation


Transcript_name:ENST00000547217.5 ENST00000548265.1 BC065220 BC050351
Distance:0
Num_trans:23241
All_trans:HGNC:23794



TATA-Box annotation


Distance to TSS:81
Nearest PromoterID:NM_015197
Entrez ID:23241
Nearest Unigene:Hs.525626
Nearest Refseq:NM_015197
Nearest Ensembl:ENSG00000179364
Gene Name:phosphofurin acidic cluster sorting protein 2
Gene Alias:EIEE66|PACS-2|PACS1L
Gene Description:phosphofurin acidic cluster sorting protein 2
Gene Type:protein-coding
CpG%:0.21
GC%:0.885572
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):