Difference between revisions of "TSS:Hg 57591.1"
From referenceTSS
| Line 9: | Line 9: | ||
|TCFCOUP1= | |TCFCOUP1= | ||
|TFCOUP1= | |TFCOUP1= | ||
| − | |all_trans=ENST00000623223 | + | |all_trans=ENST00000623223.1:-297 AK126015:-297 |
|chr=chr5 | |chr=chr5 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
|distance=-297 | |distance=-297 | ||
| − | |distance_to_tss= | + | |distance_to_tss=17434 |
|end=93600658 | |end=93600658 | ||
|end_of_center_position=93600656 | |end_of_center_position=93600656 | ||
|entrez_id=7025 | |entrez_id=7025 | ||
|gc_percent=0.472637 | |gc_percent=0.472637 | ||
| − | |gene_alias=BBOAS | + | |gene_alias=BBOAS{{!}}BBSOAS{{!}}COUP-TFI{{!}}COUPTF1{{!}}EAR-3{{!}}EAR3{{!}}ERBAL3{{!}}SVP44{{!}}TCFCOUP1{{!}}TFCOUP1 |
|gene_description=nuclear receptor subfamily 2 group F member 1 | |gene_description=nuclear receptor subfamily 2 group F member 1 | ||
|gene_id=100131066 | |gene_id=100131066 | ||
| − | |gene_name= | + | |gene_name=NR2F1 |
|gene_source=EntrezGene:100131066 | |gene_source=EntrezGene:100131066 | ||
|gene_symbol=LOC100131066 | |gene_symbol=LOC100131066 | ||
| Line 31: | Line 31: | ||
|nearest_refseq=NM_005654 | |nearest_refseq=NM_005654 | ||
|nearest_unigene=Hs.519445 | |nearest_unigene=Hs.519445 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=93600653 | |start=93600653 | ||
|start_of_center_position=93600655 | |start_of_center_position=93600655 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-33(TCCTTTTAAAGG,-,0.00),-32(CCTTTTAAAGGG,+,0.00),-32(CCTTTTAAAGGG,-,0.00),-31(CTTTTAAAGGGA,+,0.00) |
| − | |transcript_name=ENST00000623223 | + | |transcript_name=ENST00000623223.1 AK126015 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_57591.1 | |tss_id=hg_57591.1 | ||
Latest revision as of 05:49, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 93600655 |
|---|---|
| End of the center position in the TSS region: | 93600656 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000623223.1 AK126015 |
|---|---|
| Distance: | -297 |
| Num_trans: | 2 |
| All_trans: | ENST00000623223.1:-297 AK126015:-297 |
TATA-Box annotation
| Distance to TSS: | 17434 |
|---|---|
| Nearest PromoterID: | NM_005654 |
| Entrez ID: | 7025 |
| Nearest Unigene: | Hs.519445 |
| Nearest Refseq: | NM_005654 |
| Nearest Ensembl: | ENSG00000175745 |
| Gene Name: | NR2F1 |
| Gene Alias: | BBOAS|BBSOAS|COUP-TFI|COUPTF1|EAR-3|EAR3|ERBAL3|SVP44|TCFCOUP1|TFCOUP1 |
| Gene Description: | nuclear receptor subfamily 2 group F member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.472637 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(TCCTTTTAAAGG,-,0.00),-32(CCTTTTAAAGGG,+,0.00),-32(CCTTTTAAAGGG,-,0.00),-31(CTTTTAAAGGGA,+,0.00) |
